XLOC_005208 (uqcrc2b)


Basic Information

Item Value
gene id XLOC_005208
gene name uqcrc2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10424676 ~ 10441661 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010039
GGCAGAGAGTGAAGGATTTTGGGTAGGACATCCTTAGGTCAGCCATATTGCCGTGGTCTGTCTGAAGGAGAGAGAAAATATGAGGGGAATTCGGGGAATAAGCCAGTTATCGagAAGGCTTTATGCAGCCCAGGCTGCCCGTAAGGTGGATTTTGCTGCAGCTGGGGAGCCACTAAAGTTTGTGCCACAGGAAGTGCAGGTGACGAAATTGCCTAGTGGCTTAGTGATTGCTTCCTTGGAAAACTATTCTCCTGCTTCTCGGATTGGTGTTCTTGTCAGGGCCGGAAGCCGATATGAGACCACTGATAACCTTGGTGTCACACACTTGCTTCGTCTGGCTGCCAGTCTGACAACCAAGGGAGCATCTGCTTTTAGGATCTGCCGTGGTGTTGAGGCTGTTGGGGGAAGCTTAAGCGTGTCAAGCTCCAGGGAAACCATGTCATATACTGTAGACTGCCTGAGAGATCATATTGACACTGTTATGGAGTATCTGATCAATGTGACCACGGCACCCGAGTTTCGTGCATGGGAAGTGTCAGACCTCACGGGAAGGGTGAATTTGGATAAGAAACTCGCCAAGCAGACGCCACAGATTGGTGTTATTGAAGATTTACATGCTGCAGCCTATAAGAATGCCCTGTCCAATTCCTTGTACTGTCCAGACTTCAAGATTGGCCAAATCACTACCGAACAGATGCATACCTTTGTTCAGAACAACTTTACGAGTGCAAGAATGGCCCTGGTTGGTCTTGGAGTGGATCATGACATGCTGAAGCAGGTTGGAGAGCAGTTCCTGAACATCCGCAGCGGAGCGGGCACTGTTGGTTCCAAAGCTCTGTACCGTGGAGGTGAGGTGAGGCATCAGACTGGAGCAGGCCTGGTTCATGCGTTGGTGGCAATTGAAGGAGCAAGTGCAACCTCAGCTGAGGCCACTGCATTCAGTGTACTGCAGCATGTGCTCGGAGCAGGACCACGAGTCAAGAGAGGCTCCAGCAGCACCAGCACACTGACTCAGGCCATCTCAAAAGTCACCGCTCTGCCCTTTGATGCCTCTGCGTTTAATGCCAACTACACGGATTCTGGTCTTTTTGGCTTGTACACCATCTGCCAGGCTAACGCTGTCAACGATGTAATCAAAGCAGCTGTCGGTCAGGTGAATGCCATTGCTCAAGGAAACCTTGCAGCAGCAGATCTCAGCAAAGCCAAGAATCAGCTGACGGCCGATTACCTCATGTCTATTGAGAGTTCTGAGGGATTGATGGATGTTATTGGTACACATGTGCTGTCAGAGGGTACCTACCATACCCCTGAGGCTGTGACCCAGAAAATCAATGCTGTGTCTTCAGCTGATGTCGTCAACGTTGCAAAGAAATTCATGTCTGGTAAAAAGACCATGGCCTCCAGTGGGAACTTGGTCAACACACCCTTTGTTGATGAAATCTGATGGGCATTCTTGCTCATTTTCTCTTTCAAATGTCTCTTCACAAAAACAAGGACATGTTTATGATACCTTCATTGTTTCTGtccccaaaaataataataataaggttgtCATCAACAGTTGGTCTTGATATTTGTAATATTCTATAAGGTGGAGTAATCTCAAGAAAAGCGCTCAACACTTGTCCATTTGAAATGTATAGATGTAAATTAATAAAGTATCTACCAACACCATCAAA
>TCONS_00010040
TGCCGTGGTCTGTCTGAAGGAGAGAGAAAATATGAGGGGAATTCGGGGAATAAGCCAGTTATCGagAAGGCTTTATGCAGCCCAGGCTGCCCGTAAGGTGGATTTTGCTGCAGCTGGGGAGCCACTAAAGTTTGTGCCACAGGAAGTGCAGGTGACGAAATTGCCTAGTGGCTTAGTGATTGCTTCCTTGGAAAACTATTCTCCTGCTTCTCGGATTGGTGTTCTTGTCAGGGCCGGAAGCCGATATGAGACCACTGATAACCTTGGTGTCACACACTTGCTTCGTCTGGCTGCCAGTCTGGTATACAATCCATCCATCTCGACTCTGTGTTTGACTTCTGTACTGATAGTGCGCAGTGATCCTGTTAGCATTCACTTCTCTTGTTGTTGATTCCAGACAACCAAGGGAGCATCTGCTTTTAGGATCTGCCGTGGTGTTGAGGCTGTTGGGGGAAGCTTAAGGTCAGTTTTTCAGTGTTACACAAAAACAACATCTCCCTTTGGTgtatattctgtttttattttggcaGTTGACAGAATTGAAAGCTGTCATAAGCCCTACTCGGACAGGACTAGTTTCATTGTAGGATGTTCTGTTGAACTACTCTACAATCTGTAGTGCAACAGGTTTCAGGTTTCTGTGTACCaataactgtgcgtt

Function

symbol description
uqcrc2b Predicted to enable metal ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be active in mitochondrion. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1269 Predicted to enable metal ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be active in mitochondrion. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

Ensembl:

ensembl_id ENSDARG00000071691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010039 False 1679 mRNA 0.48 14 10424676 10441661
TCONS_00010040 True 661 lncRNA 0.46 3 10434456 10441613

Neighbor

gene id symbol gene type direction distance location
XLOC_005207 mosmob coding downstream 2721 10412009 ~ 10421955 (-)
XLOC_005206 eef2k coding downstream 14706 10381957 ~ 10409970 (-)
XLOC_005205 mki67 coding downstream 43394 10366617 ~ 10381282 (-)
XLOC_005204 ndc80 coding downstream 58707 10353333 ~ 10365969 (-)
XLOC_005203 tut1 coding downstream 72675 10337674 ~ 10352001 (-)
XLOC_005209 rac1a coding upstream 23236 10464897 ~ 10476448 (-)
XLOC_005210 zgc:152977 coding upstream 37005 10478666 ~ 10512911 (-)
XLOC_005211 myof coding upstream 75812 10517473 ~ 10567188 (-)
XLOC_005212 med24 coding upstream 202413 10644074 ~ 10674606 (-)
XLOC_005213 FO704786.1 coding upstream 237365 10679026 ~ 10705916 (-)
XLOC_005200 NA non-coding downstream 294774 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 361008 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 753539 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 776331 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 1079191 9345364 ~ 9345485 (-)
XLOC_005214 NA non-coding upstream 327470 10769131 ~ 10772946 (-)
XLOC_005222 BX572641.1 non-coding upstream 1893555 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2661205 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3696625 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4398126 14839787 ~ 14840559 (-)

Expression


Co-expression Network