XLOC_005212 (med24)


Basic Information

Item Value
gene id XLOC_005212
gene name med24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10644074 ~ 10674606 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010048
ATGAAGGTGGTGAATCTGAAACAGGCCATCCTACAGGCGTGGAAGGAACGTTGGAGTGATTATCAGTGGGCCATTAACATTAAGAAGAACTGTCCCAAAGGAGCTACATGGGATTATCTCAATCTAGCAGAAGCTCTTCTGGAGCAGGCTATGATTGGCCCATCTCCCAACCCCCTGATCCTGTCCTATCTGAAGTATGCCATCAGTTCACAGATGGTGTCGTATTCTAGTGTGTTAACGGCAATCAGCAAGTTTGATGATTTTTCACGGGAGCTATGTGTCAAATCATTGCTTGAGATTATGGACATGTTCTCCAACCGACTAAGCTGTCATGGAAAGGCAGAGGAGTGTATTGGGCTCTGCCGCGCCATGCTGTGTACCGTGGTTTGGCTCCTGCAGGGCTGTGCATGGTACTGTGAGAGACTGCGGGACCCCAATGATTTTTCTGCATTAGAAAGCAGTCTGAGGGCCTGCCTGGAGCGCATGGCCAATCTCTTGCACAGCACAAAGAACAGAGCCTTGGTACACATCGCACGCCTGGAGGAGCAAGCATCCTGGACCAATGTAGAGCAAGCTGTGCTCAAGCTGACAGAAAATCTCAGTGCTGTGACCAATCCAACTCTGAAGGAAAGTCTTGAGGAGTGTGTTTCATTGGTCAAAAGTATTCCTCAGATGTTGTGTCTTCAGTGTGATCCACCAGTCCACACCACATTTCCTTCAGTCCATGCCTTCATCATGCTGGAGGGAACCATGAACCTCACTGGAGAGACGCAGCCATTAGTGGAGCAGCTAATGATGATCAAGAGGATGCAGCGGATTCCAGCTCCACTGTTTGTGCTGGAGATCTGGAAGGCCTGTTTCACTGGACTTATCGAGTCCCCAGAGGGAAACGAGGAGCTCAAATGGACTGCCTTCACATTCCTAAAGATTCCTCAAGTTTTACTAAGACTAAAAAAGTACCCACAAGGAGAGAAGACGCAGGATTTTACGGAGGATGTGAATGTGGCTTTTGAATATCTTCTGAATCTCACTCCTTTGCTGGATAAAGCTGATCAGAGATGCAActgTGACTGCTTGAGTCTTTTACTGCAGGAGTGTAATAAACTGGGGCTGCTCTCTGAAGCAAACACCGCCACTCTTACTGCAAAACGGAGTGAGGACCGAGAACATGCACCTAGACTGAAGACAGCAGAAAATGCCAACATTCAGCCCAATCCAGGCCTCATCTTGAGAGCCGAACCAACTGTCACCAACATCCTTAAGACCGTGGATGCGGATCATTCTAAGTCTCCCGAGGGATTGCTGGGAGTTTTGGGTCACATGCTCTCAGGAAAGAGTCTTGATTTGCTACTGGCCGCTGCTGCAGCCACTGGAAAACTCAAGTCTTTCGCCCGCAAATTCATCAAGCTGAACGAGTTTCCAAAGCACATTAGTGGAGAAGGATCGAAGTCTGCATCAGTACGAGCTCTGCTATTCGACATTTCCTTCCTCATGCTGTGTCATGTCGTACAGACGTATGGATCAGAGGTGATTCTTTCAGACCCCAGCCCATCAAGCGAGACCCCTTTCTTTGAGACATGGCTTCAGACGTGCATGCCAGAGGAAGGGAAGACCCTGAATCCAGACCACCCTTGCTTTAGACCTGAGTCTGGGAAGGTGGAGAGCCTGGTGGCCCTGCTTAATTCTTCATCTGAGATGAAGCTTGTTCAGATGAAATGGCATGAAATATGTCTTAGTACTCCTGCAGCTATACTTGAGGTCCTGAATGCCTGGGAAAATGGAGTTTTGTCAGTGGAGGCTGTTCAGAAGATCACAGATAATATAAAAGGAAAGGTGTGCAGTATGGCCATCTGTGCAGTGGCATGGCTGGTGGCTCACGTTCGGATGCTGGGATTGGATGAGAGAGAAAAACCTCAGACTATGATTCGTCAGCTCATGACTCCTATGTCAGGGGAAAACACTTTGCAGTTTTACCATGAGCGTGTGGTGATCATGAGCTCTATCTTGGAGCACATGTGTGCTGATGTGTTTCAACAAACAGGACTGTCTCTGCGACCAGCAGTCGAGGGTCAGGAGCCAATTCCCTACCGGAACCTTCTCCCAGCTCGCCTGCCCATCCGACAGGCTCTGCAGTCCCAGTTCAGAAAGGTTCTGGAAAAGGGCTGGGTGGACTCGCATGCGTTTCATCTCTTTGAGAACCTGCTACACATGGGAGGGGTGTTCTGGTTTACTAACAACCTGGTAAAGGAACTCTTAAAGGAGACGCGTAAAGAGTGGGCGTCTCGTGTGGTGGAGTTGCTTTATAGTATTTTCTGCCTGGACACACAGCAAATCACCCTCACTCTACTGGGTCATATTTTGCCACGTCTCCTCACTGACCCTGCACACTGGCACAGCCTGGCAGACCCACCCGGCAGAGCCCTTGCAAAgtTATCAGTGTGGTGTGCTCTCAGTTCTTACTCGTCTCATCATAAGGGTCAAGCATCAGCACGACAACGCAAAAGACACCGTGAGGATATAGAGGACTACACCAGCCTGTTCCCTTTGGATGACACACAGCCATCTAAACTGATGCGTTTGCTGAGCTCCAATGAGGACGAGAATTCTATGCTGTCCAGTCCAGGTGACCGTTCCATAAGCAGTTCACTGTCTGCCTCTCAGCTCCACACCGTCAACATGAGAGATCCTCTCAACCGAGTGCTGGCAAATCTCTTCCTGTTGATTTCCTCTCAGTTGGGGTCTAAGACAGCAGGCCCACACACGCAGTTTGTTCAGAGCTTTGTTGAGGAGTGTGTGGACTGTTCAGAGCAAGGCAGCCGCAGCAGCATCCTGCAGTTTATGCCCTTTACCATGATTTCCGAGCTGGTGAAGCTTCAGTCACTGGCTAAACCTAAAACTGTGCTGTCCATCACAGACCTGAGCCTTCCTCTGGGCCGGAGAATGGCGGCTAAAGCCATCGCTGCTCTTTAG

Function

symbol description
med24 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0046549 retinal cone cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0061453 interstitial cell of Cajal differentiation biological_process
GO:0048538 thymus development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-2341 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

Ensembl:

ensembl_id ENSDARG00000099431

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010048 True 2970 mRNA 0.50 25 10644074 10674606

Neighbor

gene id symbol gene type direction distance location
XLOC_005211 myof coding downstream 76886 10517473 ~ 10567188 (-)
XLOC_005210 zgc:152977 coding downstream 131163 10478666 ~ 10512911 (-)
XLOC_005209 rac1a coding downstream 167626 10464897 ~ 10476448 (-)
XLOC_005208 uqcrc2b coding downstream 202413 10424676 ~ 10441661 (-)
XLOC_005207 mosmob coding downstream 222119 10412009 ~ 10421955 (-)
XLOC_005213 FO704786.1 coding upstream 4420 10679026 ~ 10705916 (-)
XLOC_005214 NA coding upstream 94525 10769131 ~ 10772946 (-)
XLOC_005215 si:ch73-30l9.1 coding upstream 570308 11244914 ~ 11258404 (-)
XLOC_005216 get4 coding upstream 588348 11262954 ~ 11306766 (-)
XLOC_005217 zgc:174164 coding upstream 641243 11315849 ~ 11349899 (-)
XLOC_005200 NA non-coding downstream 514172 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 580406 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 972937 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 995729 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 1298589 9345364 ~ 9345485 (-)
XLOC_005222 BX572641.1 non-coding upstream 1660610 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2428260 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3463680 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4165181 14839787 ~ 14840559 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_03010015_03035734 MED24 coding CI01000161 null 3010015 ~ 3036167 (+)
bowfin (Amia calva) AMCG00016758 med24 coding CM030122.1 CM030122.1 29701416 ~ 29714465 (-)