XLOC_005204 (ndc80)


Basic Information

Item Value
gene id XLOC_005204
gene name ndc80
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10353333 ~ 10365969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010033
aaacagcCAGTGACGTCATACGAGTGATCCGTTGAGCTGCGGTCGCGGAAATTTTTGAAATTTAACCGAAGCATCGACGGAAGAAAATACTGGTGTAAAATACCAAACCCGCCGTATTTCTGATTCTGATGCCGCTGGTGTTTAATATACGGATAAGTTACATCTGATATGCTGATTTCTGCAGTGCAGTGTTATAAACCCAACCGAGAAGCGTCCTCCAACTGAAGATAATAAAGGAGTGTGTTTTTAAAGGTCAAGATGAGTCGGCGTCCCAGCAGCAGGTATTCGGAGATGCCCATGCGTGTGACAGACAGCAGGATGAGCCTGATCAATGCCACCCCTCAAAATAAGGACAATGCATTTGGGAAGCTTAACATACCTAAACCTCAGTCCACCACATCTGAGAGGCGAACCAGCTTTTTTGGAAAAGGCATTGGGGCAGGTGGCCAGAGGAACAGCATGTTTGGTAGTTATGGGGGCTCAGAGAAAATGAAGGATCCCAGAGCCCTACATGACAAAGCTTTTGTTCAGCAGTGCATCAAGCAGCTTTATGAATTCCTAGTGGACAGAGGCTTTCCAGGCAGCATCACAGTGAAGGCTCTCCAGTCTCCATCCACAAAAGAGTTTTTAAAGATTTACGAATTTATCTACAATTTTTTAGAACCATCCTTTCAAATGCCTACTGCCAAAGTGGAGGAAGAGATCCCAAGAATGCTCAAAGATTTGGGATACCCGTTTGCACTCTCAAAAAGCTCTATGTACTCCATTGGTGCTCCTCACACATGGCCTCTGGCTCTTGGAGCTCTCATCTGGCTCATGGATGCTGTCAAGCTATTTGGTGGTCAAAGAGAGCAGGACCTGCTGTTCTCTGACTTCTCAGATGAGCTGTGTGATTTAGAGGACCGAACAGAGTACAACAAGCTCATTATGGAATACTGCTCTGATACCTACAACAAGTTCATGCAGGGAGCAGATACGTTTGATGATGAGGATGACGACTTTCTTTATAAACTAAAGAAGCTGTATAATGTGGATGAGGCGCTGTTACATTCCCAACAGGAGAAGCATAGCATGCTGATGGAACATGTGGAGAGACTTGAAAGGGAGAGCCAAACTGATCGTTTAGTAGGCAAGAGGACGGAGAAGCTCAGATTACAGACGGATCTACAAAAGCTGCAGAACTATCGTTGTACTCTAGAGGCTCATAAAACTGGACTGGAGAATAAATCTGCTGGACTGACCGAGGAGCTTGAGGCTGTTGAGATGCAGCTGGAGGGTCTGAAGCAGGAGAGGACGAGGCTGCAGCACATCCTGGAGAATCAGAAGTTTACTCCAGCTGATATTGAACGCATTAATCGAGAGAGGAATGAACTACAGCAAACCATTCACGGCTTAAGCCAGAGCCTAGAGGAGGGGGAGCAGCTGGTTTGGAACGAGGAGGTCAACCTGTCTAAAACCAAAGAGAAGGCGGAGTTGAAAGTTGCTGAGTATAATAAACTGGGTCGTAAGCTAAAGCTCATCCCGCTATCAGCAGAGAATGCCTGTGGTCATGACTTTGAGATCAGAGCTGATTACAGTGCCACTACCATTACACAATACAAGACACAGATACAGAATCCTCTGAAGAACATGATGGTTGAGGTGGAGGAAGAATTCAGCAGACTCTCTAATGTAAATCTGAGTTTGGAAGAGACTGTTGAACAGGTGAAGTCCAACATCTTTGATAAGGAGAACGACATTAAGCAGCTTAAGGAACAGATTCGCAAAGTCGACCAGCAGCTGGAGAATGCCATGCAGGAAATGGCGCTGGAGGATGACAAGTGGGCAGCTGAATTGGACTCTGCCGAAACTCATAAGAAGCTTTTTGAAAAGAATGTAATGCAGGGGATTGAGGAAGCTGAAGAGGAAGTCAAAGCTGCCCAACAACAGTATCACGTCGTCGTGCAGGAAACTAATGAGAAGAATCGCATGGTGGTCAAGAATATGACTGATCTCTTCAGTTCCACAGTAAACCACCTGTTTGCTGTTGAGAAACACTGTGATGAGCAGTTGAAAAGGTTTGACAAGCTGAAGGATATCGTCCGTGAGGATGAGGCTGACATTAACCAGCTCACAGATCTGGTGGAAAACTTCATTAAGAAAGCCAACAGCTTGTAATGCTTAACTGTCCTGTTTTGTAAATACTTTTACTATTAGACTAATTTACTGATTCTAGCACCACAGAAACGTCTTTAAATACAGAATcaaatgttttgtatttatcctgtatttacatcattttaataaatgtgttttcatttctaaatgtga
>TCONS_00010034
GTAAAATACCAAACCCGCCGTATTTCTGATTCTGATGCCGCTGGTGTTTAATATACGGATAAGTTACATCTGATATGCTGATTTCTGCAGTGCAGTGTTATAAACCCAACCGAGAAGCGTCCTCCAACTGAAGATAATAAAGGAGTGTGTTTTTAAAGGTCAAGATGAGTCGGCGAACCAGCTTTTTTGGAAAAGGCATTGGGGCAGGTGGCCAGAGGAACAGCATGTTTGGTAGTTATGGGGGCTCAGAGAAAATGAAGGATCCCAGAGCCCTACATGACAAAGCTTTTGTTCAGCAGTGCATCAAGCAGCTTTATGAATTCCTAGTGGACAGAGGCTTTCCAGGCAGCATCACAGTGAAGGCTCTCCAGTCTCCATCCACAAAAGAGTTTTTAAAGATTTACGAATTTATCTACAATTTTTTAGAACCATCCTTTCAAATGCCTACTGCCAAAGTGGAGGAAGAGATCCCAAGAATGCTCAAAGATTTGGGATACCCGTTTGCACTCTCAAAAAGCTCTATGTACTCCATTGGTGCTCCTCACACATGGCCTCTGGCTCTTGGAGCTCTCATCTGGCTCATGGATGCTGTCAAGCTATTTGGTGGTCAAAGAGAGCAGGACCTGCTGTTCTCTGACTTCTCAGATGAGCTGTGTGATTTAGAGGACCGAACAGAGTACAACA

Function

symbol description
ndc80 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; mitotic spindle organization; and positive regulation of mitotic cell cycle spindle assembly checkpoint. Predicted to act upstream of or within cell division. Predicted to be located in kinetochore. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Orthologous to human NDC80 (NDC80 kinetochore complex component).

GO:

id name namespace
GO:0090267 positive regulation of mitotic cell cycle spindle assembly checkpoint biological_process
GO:0007049 cell cycle biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051301 cell division biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-904 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; mitotic spindle organization; and positive regulation of mitotic cell cycle spindle assembly checkpoint. Predicted to act upstream of or within cell division. Predicted to be located in kinetochore. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Orthologous to human NDC80 (NDC80 kinetochore complex component).

Ensembl:

ensembl_id ENSDARG00000071694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010033 False 2310 mRNA 0.44 17 10353333 10365969
TCONS_00010034 True 684 mRNA 0.45 7 10360880 10365875

Neighbor

gene id symbol gene type direction distance location
XLOC_005203 tut1 coding downstream 1332 10337674 ~ 10352001 (-)
XLOC_005202 pyyb coding downstream 38294 10304435 ~ 10315039 (-)
XLOC_005201 mpp2b coding downstream 53232 10199219 ~ 10300101 (-)
XLOC_005200 NA coding downstream 223431 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 coding downstream 289665 10060636 ~ 10063668 (-)
XLOC_005205 mki67 coding upstream 648 10366617 ~ 10381282 (-)
XLOC_005206 eef2k coding upstream 15988 10381957 ~ 10409970 (-)
XLOC_005207 mosmob coding upstream 46040 10412009 ~ 10421955 (-)
XLOC_005208 uqcrc2b coding upstream 58707 10424676 ~ 10441661 (-)
XLOC_005209 rac1a coding upstream 98928 10464897 ~ 10476448 (-)
XLOC_005196 AL732629.2 non-coding downstream 682196 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 704988 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 1007848 9345364 ~ 9345485 (-)
XLOC_005214 NA non-coding upstream 403162 10769131 ~ 10772946 (-)
XLOC_005222 BX572641.1 non-coding upstream 1969247 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2736897 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3772317 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4473818 14839787 ~ 14840559 (-)

Expression


Co-expression Network