RNA id: TCONS_00010033


Basic Information

Item Value
RNA id TCONS_00010033
length 2310
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_005204
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10353333 ~ 10365969 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacagcCAGTGACGTCATACGAGTGATCCGTTGAGCTGCGGTCGCGGAAATTTTTGAAATTTAACCGAAGCATCGACGGAAGAAAATACTGGTGTAAAATACCAAACCCGCCGTATTTCTGATTCTGATGCCGCTGGTGTTTAATATACGGATAAGTTACATCTGATATGCTGATTTCTGCAGTGCAGTGTTATAAACCCAACCGAGAAGCGTCCTCCAACTGAAGATAATAAAGGAGTGTGTTTTTAAAGGTCAAGATGAGTCGGCGTCCCAGCAGCAGGTATTCGGAGATGCCCATGCGTGTGACAGACAGCAGGATGAGCCTGATCAATGCCACCCCTCAAAATAAGGACAATGCATTTGGGAAGCTTAACATACCTAAACCTCAGTCCACCACATCTGAGAGGCGAACCAGCTTTTTTGGAAAAGGCATTGGGGCAGGTGGCCAGAGGAACAGCATGTTTGGTAGTTATGGGGGCTCAGAGAAAATGAAGGATCCCAGAGCCCTACATGACAAAGCTTTTGTTCAGCAGTGCATCAAGCAGCTTTATGAATTCCTAGTGGACAGAGGCTTTCCAGGCAGCATCACAGTGAAGGCTCTCCAGTCTCCATCCACAAAAGAGTTTTTAAAGATTTACGAATTTATCTACAATTTTTTAGAACCATCCTTTCAAATGCCTACTGCCAAAGTGGAGGAAGAGATCCCAAGAATGCTCAAAGATTTGGGATACCCGTTTGCACTCTCAAAAAGCTCTATGTACTCCATTGGTGCTCCTCACACATGGCCTCTGGCTCTTGGAGCTCTCATCTGGCTCATGGATGCTGTCAAGCTATTTGGTGGTCAAAGAGAGCAGGACCTGCTGTTCTCTGACTTCTCAGATGAGCTGTGTGATTTAGAGGACCGAACAGAGTACAACAAGCTCATTATGGAATACTGCTCTGATACCTACAACAAGTTCATGCAGGGAGCAGATACGTTTGATGATGAGGATGACGACTTTCTTTATAAACTAAAGAAGCTGTATAATGTGGATGAGGCGCTGTTACATTCCCAACAGGAGAAGCATAGCATGCTGATGGAACATGTGGAGAGACTTGAAAGGGAGAGCCAAACTGATCGTTTAGTAGGCAAGAGGACGGAGAAGCTCAGATTACAGACGGATCTACAAAAGCTGCAGAACTATCGTTGTACTCTAGAGGCTCATAAAACTGGACTGGAGAATAAATCTGCTGGACTGACCGAGGAGCTTGAGGCTGTTGAGATGCAGCTGGAGGGTCTGAAGCAGGAGAGGACGAGGCTGCAGCACATCCTGGAGAATCAGAAGTTTACTCCAGCTGATATTGAACGCATTAATCGAGAGAGGAATGAACTACAGCAAACCATTCACGGCTTAAGCCAGAGCCTAGAGGAGGGGGAGCAGCTGGTTTGGAACGAGGAGGTCAACCTGTCTAAAACCAAAGAGAAGGCGGAGTTGAAAGTTGCTGAGTATAATAAACTGGGTCGTAAGCTAAAGCTCATCCCGCTATCAGCAGAGAATGCCTGTGGTCATGACTTTGAGATCAGAGCTGATTACAGTGCCACTACCATTACACAATACAAGACACAGATACAGAATCCTCTGAAGAACATGATGGTTGAGGTGGAGGAAGAATTCAGCAGACTCTCTAATGTAAATCTGAGTTTGGAAGAGACTGTTGAACAGGTGAAGTCCAACATCTTTGATAAGGAGAACGACATTAAGCAGCTTAAGGAACAGATTCGCAAAGTCGACCAGCAGCTGGAGAATGCCATGCAGGAAATGGCGCTGGAGGATGACAAGTGGGCAGCTGAATTGGACTCTGCCGAAACTCATAAGAAGCTTTTTGAAAAGAATGTAATGCAGGGGATTGAGGAAGCTGAAGAGGAAGTCAAAGCTGCCCAACAACAGTATCACGTCGTCGTGCAGGAAACTAATGAGAAGAATCGCATGGTGGTCAAGAATATGACTGATCTCTTCAGTTCCACAGTAAACCACCTGTTTGCTGTTGAGAAACACTGTGATGAGCAGTTGAAAAGGTTTGACAAGCTGAAGGATATCGTCCGTGAGGATGAGGCTGACATTAACCAGCTCACAGATCTGGTGGAAAACTTCATTAAGAAAGCCAACAGCTTGTAATGCTTAACTGTCCTGTTTTGTAAATACTTTTACTATTAGACTAATTTACTGATTCTAGCACCACAGAAACGTCTTTAAATACAGAATcaaatgttttgtatttatcctgtatttacatcattttaataaatgtgttttcatttctaaatgtga

Function

GO:

id name namespace
GO:0090267 positive regulation of mitotic cell cycle spindle assembly checkpoint biological_process
GO:0007049 cell cycle biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051301 cell division biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-904 Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; mitotic spindle organization; and positive regulation of mitotic cell cycle spindle assembly checkpoint. Predicted to act upstream of or within cell division. Predicted to be located in kinetochore. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Orthologous to human NDC80 (NDC80 kinetochore complex component).

Ensembl:

ensembl_id ENSDART00000007335

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010030 lncRNA downstream 133214 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00011103 lncRNA downstream 223431 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010026 lncRNA downstream 289665 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011102 lncRNA downstream 1115539 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 1124704 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010040 lncRNA upstream 68487 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 99656 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010801 lncRNA upstream 403162 10769131 ~ 10772946 (-) True XLOC_005214
TCONS_00011104 lncRNA upstream 1281223 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00011105 lncRNA upstream 2736897 13102866 ~ 13106223 (-) True XLOC_005224
TCONS_00010032 mRNA downstream 1332 10337674 ~ 10352001 (-) True XLOC_005203
TCONS_00010031 mRNA downstream 38294 10304435 ~ 10315039 (-) True XLOC_005202
TCONS_00010027 mRNA downstream 53232 10199219 ~ 10300101 (-) False XLOC_005201
TCONS_00010028 mRNA downstream 78013 10199926 ~ 10275320 (-) False XLOC_005201
TCONS_00010029 mRNA downstream 133297 10200101 ~ 10220036 (-) False XLOC_005201
TCONS_00010035 mRNA upstream 648 10366617 ~ 10381282 (-) True XLOC_005205
TCONS_00010036 mRNA upstream 15988 10381957 ~ 10409970 (-) False XLOC_005206
TCONS_00010037 mRNA upstream 16562 10382531 ~ 10409961 (-) True XLOC_005206
TCONS_00010038 mRNA upstream 46040 10412009 ~ 10421955 (-) True XLOC_005207
TCONS_00010039 mRNA upstream 58707 10424676 ~ 10441661 (-) False XLOC_005208
TCONS_00010022 other downstream 682196 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 704988 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010015 other downstream 836352 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 836380 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010009 other downstream 989460 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010060 other upstream 1969247 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 3237770 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 5215351 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 6042339 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 6049841 16415810 ~ 16434838 (-) False XLOC_005253

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_00532901_00545479.mRNA True 3090 mRNA 0.44 14 CI01000047 531554 ~ 545479 (-)