RNA id: TCONS_00010030


Basic Information

Item Value
RNA id TCONS_00010030
length 523
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_005201
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10199219 ~ 10300101 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTTGTAAAGTGTCACTTCGACTATGACCCCTCTCATGACAACCTGATCCCCTGTAAAGAGGCTGGACTTAAATTCAGCAGTGGAGACATCCTACAGATCTTCAACCAGGAGGACCCCAACTGgtggcagGCTTGTCATCTGGAAGGAGGCAGTGCTGGTCTGATCCCCAGTCAGCTGCTGGAGGAGAAGAGAAAAGCATTTGTCAAGAGAGATCTGGAGCTTGCAAGCACAGGGATAGGCggtaagaagaagaagaagatgatgtACTTGACCACCAAGAACGCCGGTAAAGACGACTGCTCCAGGGCATGTGCCGTATACTCTCGTTCTCTGTTGTGTCTCGTATTGAAGTCTGCTTGTTAACATATTTCATGATAATGGGCTTAAAGTCAGTTCCATTTCAGTAAAAGAagaattgcattttatttaaagaaaatgaaagCTGTGGTACTGCATTCTCCAGGAAAAGGTCACTGTagaaaaaatatctgttaattaactgtttccacattttgtgatt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-70 Is expressed in basal plate midbrain region; nervous system; and pronephric duct. Orthologous to human MPP2 (membrane palmitoylated protein 2).

Ensembl:

ensembl_id ENSDART00000132515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011103 lncRNA downstream 85428 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010026 lncRNA downstream 151662 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011102 lncRNA downstream 977536 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 986701 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 1127764 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010040 lncRNA upstream 214337 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 245506 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010801 lncRNA upstream 549012 10769131 ~ 10772946 (-) True XLOC_005214
TCONS_00011104 lncRNA upstream 1427073 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00011105 lncRNA upstream 2882747 13102866 ~ 13106223 (-) True XLOC_005224
TCONS_00010025 mRNA downstream 176460 9949941 ~ 10038870 (-) True XLOC_005198
TCONS_00010024 mRNA downstream 419093 9789312 ~ 9796237 (-) True XLOC_005197
TCONS_00010023 mRNA downstream 424845 9781524 ~ 9790485 (-) False XLOC_005197
TCONS_00010020 mRNA downstream 514725 9619909 ~ 9700605 (-) True XLOC_005194
TCONS_00010019 mRNA downstream 597560 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010031 mRNA upstream 84316 10304435 ~ 10315039 (-) True XLOC_005202
TCONS_00010032 mRNA upstream 117555 10337674 ~ 10352001 (-) True XLOC_005203
TCONS_00010033 mRNA upstream 133214 10353333 ~ 10365969 (-) False XLOC_005204
TCONS_00010034 mRNA upstream 140761 10360880 ~ 10365875 (-) True XLOC_005204
TCONS_00010035 mRNA upstream 146498 10366617 ~ 10381282 (-) True XLOC_005205
TCONS_00010022 other downstream 544193 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 566985 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010015 other downstream 698349 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 698377 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010009 other downstream 851457 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010060 other upstream 2115097 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 3383620 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 5361201 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 6188189 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 6195691 16415810 ~ 16434838 (-) False XLOC_005253

Expression Profile

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