RNA id: TCONS_00010021


Basic Information

Item Value
RNA id TCONS_00010021
length 118
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_005195
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9648228 ~ 9648345 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgccacagccatatcaccctgcagtccaagaccagttactcaatGAAGCTTAAGCAAGGCTGAGCCTGGGGAGTACctgtatgggagaccacatgggaaaactagattgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000116498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011102 lncRNA downstream 410434 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 419599 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010000 lncRNA downstream 560662 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 563660 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009995 lncRNA downstream 1052864 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010026 lncRNA upstream 412291 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011103 lncRNA upstream 476315 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010030 lncRNA upstream 566985 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010040 lncRNA upstream 786111 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 817280 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010019 mRNA downstream 30458 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010018 mRNA downstream 109650 9519250 ~ 9538578 (-) True XLOC_005192
TCONS_00010017 mRNA downstream 114272 9519250 ~ 9533956 (-) False XLOC_005192
TCONS_00010014 mRNA downstream 131247 9510477 ~ 9516981 (-) False XLOC_005191
TCONS_00010013 mRNA downstream 150168 9482875 ~ 9498060 (-) True XLOC_005190
TCONS_00010023 mRNA upstream 133179 9781524 ~ 9790485 (-) False XLOC_005197
TCONS_00010024 mRNA upstream 140967 9789312 ~ 9796237 (-) True XLOC_005197
TCONS_00010025 mRNA upstream 301596 9949941 ~ 10038870 (-) True XLOC_005198
TCONS_00010027 mRNA upstream 550874 10199219 ~ 10300101 (-) False XLOC_005201
TCONS_00010028 mRNA upstream 551581 10199926 ~ 10275320 (-) False XLOC_005201
TCONS_00010015 other downstream 131247 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 131275 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010009 other downstream 284355 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010008 other downstream 302743 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010005 other downstream 531050 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010022 other upstream 21582 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010060 other upstream 2686871 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 3955394 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 5932975 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 6759963 16408308 ~ 16416757 (-) False XLOC_005253