Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_005197 |
| gene name | prdm9 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 9781524 ~ 9796237 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| prdm9 | Predicted to enable histone-lysine N-methyltransferase activity; protein homodimerization activity; and recombination hotspot binding activity. Predicted to be involved in several processes, including histone lysine methylation; meiosis I; and positive regulation of histone methylation. Predicted to act upstream of or within chromatin organization; meiotic cell cycle; and methylation. Predicted to be located in chromosome. Predicted to be active in nucleus. Orthologous to human PRDM9 (PR/SET domain 9). |
| id | name | namespace |
|---|---|---|
| GO:0044648 | histone H3-K4 dimethylation | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:1905516 | positive regulation of fertilization | biological_process |
| GO:1990918 | double-strand break repair involved in meiotic recombination | biological_process |
| GO:2001255 | positive regulation of histone H3-K36 trimethylation | biological_process |
| GO:0048232 | male gamete generation | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0007292 | female gamete generation | biological_process |
| GO:0097676 | histone H3-K36 dimethylation | biological_process |
| GO:0080182 | histone H3-K4 trimethylation | biological_process |
| GO:0097692 | histone H3-K4 monomethylation | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0051567 | histone H3-K9 methylation | biological_process |
| GO:0097198 | histone H3-K36 trimethylation | biological_process |
| GO:0051321 | meiotic cell cycle | biological_process |
| GO:1905437 | positive regulation of histone H3-K4 trimethylation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007129 | homologous chromosome pairing at meiosis | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0042800 | histone methyltransferase activity (H3-K4 specific) | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0046975 | histone methyltransferase activity (H3-K36 specific) | molecular_function |
| GO:0010844 | recombination hotspot binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1319 | Predicted to enable histone-lysine N-methyltransferase activity; protein homodimerization activity; and recombination hotspot binding activity. Predicted to be involved in several processes, including histone lysine methylation; meiosis I; and positive regulation of histone methylation. Predicted to act upstream of or within chromatin organization; meiotic cell cycle; and methylation. Predicted to be located in chromosome. Predicted to be active in nucleus. Orthologous to human PRDM9 (PR/SET domain 9). |
| ensembl_id | ENSDARG00000005382 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00010023 | False | 2918 | mRNA | 0.47 | 6 | 9781524 | 9790485 |
| TCONS_00010024 | True | 453 | mRNA | 0.44 | 4 | 9789312 | 9796237 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_005194 | heatr1 | coding | downstream | 80919 | 9619909 ~ 9700605 (-) |
| XLOC_005196 | AL732629.2 | coding | downstream | 110387 | 9669927 ~ 9671137 (-) |
| XLOC_005195 | AL732629.1 | coding | downstream | 133179 | 9648228 ~ 9648345 (-) |
| XLOC_005193 | arg1 | coding | downstream | 163754 | 9597151 ~ 9617770 (-) |
| XLOC_005192 | nudt13 | coding | downstream | 242946 | 9519250 ~ 9538578 (-) |
| XLOC_005198 | ngfrb | coding | upstream | 153704 | 9949941 ~ 10038870 (-) |
| XLOC_005199 | BX928755.1 | coding | upstream | 264399 | 10060636 ~ 10063668 (-) |
| XLOC_005200 | NA | coding | upstream | 328423 | 10124660 ~ 10129902 (-) |
| XLOC_005201 | mpp2b | coding | upstream | 402982 | 10199219 ~ 10300101 (-) |
| XLOC_005202 | pyyb | coding | upstream | 508198 | 10304435 ~ 10315039 (-) |
| XLOC_005187 | CR457459.1 | non-coding | downstream | 436039 | 9345364 ~ 9345485 (-) |
| XLOC_005185 | NA | non-coding | downstream | 543730 | 9227386 ~ 9237794 (-) |
| XLOC_005184 | CR854953.1 | non-coding | downstream | 664346 | 9117052 ~ 9117178 (-) |
| XLOC_005214 | NA | non-coding | upstream | 972894 | 10769131 ~ 10772946 (-) |
| XLOC_005222 | BX572641.1 | non-coding | upstream | 2538979 | 12335216 ~ 12335331 (-) |
| XLOC_005224 | NA | non-coding | upstream | 3306629 | 13102866 ~ 13106223 (-) |
