RNA id: TCONS_00010029


Basic Information

Item Value
RNA id TCONS_00010029
length 741
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_005201
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10199219 ~ 10300101 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAGACATCCTACAGATCTTCAACCAGGAGGACCCCAACTGgtggcagGCTTGTCATCTGGAAGGAGGCAGTGCTGGTCTGATCCCCAGTCAGCTGCTGGAGGAGAAGAGAAAAGCATTTGTCAAGAGAGATCTGGAGCTTGCAAGCACAGGGATAGGCggtaagaagaagaagaagatgatgtACTTGACCACCAAGAACGCCGAGTTTGACCGCCATGAGTTGAGGATCTACGAGGAAGTGGCCAGGGTGCCTCCGTTCCGCAGGAAGACGCTGGTTCTGATTGGTGCTCAGGGCGTGGGGCGACGCAGCTTGAAAAACAAACTACTGGTGTCAGACCCGCACCGCTACGGAACCACCACACCCTACACATCTCGTAAACCCAAGGTGGATGAGAAAGAAGGGCAGATGTACCTGTTCATGTCCCGCAGCGAGATGGAAACTGACATTAAATGTGGTCGTTTCCTGGAGCACGGGGAGTATGATGGAAACCTGTATGGCACCAAGATCGACTCCATTCATGAGGTTGTGGACTCTGGAAAGATTTGCATTCTGGATGTCAATCCGCAGgcACTCAAAGTTTTGCGAACAGCCGAATTTCTTCCATATGTGGTGTTTATCGAAGCTCCAAACTTTGAGGTTCTTAAGGACATGAACAGATCTGCCATTGAAGCTGGTGTTGTGACTAAACAGATGACGGATTCAGAACTGAAACGGACGGTGGACGAGAGCGAAAGGAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-70 Is expressed in basal plate midbrain region; nervous system; and pronephric duct. Orthologous to human MPP2 (membrane palmitoylated protein 2).

Ensembl:

ensembl_id ENSDART00000134619

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011103 lncRNA downstream 70199 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010026 lncRNA downstream 136433 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011102 lncRNA downstream 962307 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00011101 lncRNA downstream 971472 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00010003 lncRNA downstream 1115533 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00010040 lncRNA upstream 214420 10434456 ~ 10441613 (-) True XLOC_005208
TCONS_00010042 lncRNA upstream 245589 10465625 ~ 10470405 (-) True XLOC_005209
TCONS_00010801 lncRNA upstream 549095 10769131 ~ 10772946 (-) True XLOC_005214
TCONS_00011104 lncRNA upstream 1427156 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00011105 lncRNA upstream 2882830 13102866 ~ 13106223 (-) True XLOC_005224
TCONS_00010025 mRNA downstream 161231 9949941 ~ 10038870 (-) True XLOC_005198
TCONS_00010024 mRNA downstream 403864 9789312 ~ 9796237 (-) True XLOC_005197
TCONS_00010023 mRNA downstream 409616 9781524 ~ 9790485 (-) False XLOC_005197
TCONS_00010020 mRNA downstream 499496 9619909 ~ 9700605 (-) True XLOC_005194
TCONS_00010019 mRNA downstream 582331 9597151 ~ 9617770 (-) True XLOC_005193
TCONS_00010031 mRNA upstream 84399 10304435 ~ 10315039 (-) True XLOC_005202
TCONS_00010032 mRNA upstream 117638 10337674 ~ 10352001 (-) True XLOC_005203
TCONS_00010033 mRNA upstream 133297 10353333 ~ 10365969 (-) False XLOC_005204
TCONS_00010034 mRNA upstream 140844 10360880 ~ 10365875 (-) True XLOC_005204
TCONS_00010035 mRNA upstream 146581 10366617 ~ 10381282 (-) True XLOC_005205
TCONS_00010022 other downstream 528964 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 551756 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010015 other downstream 683120 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other downstream 683148 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010009 other downstream 836228 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010060 other upstream 2115180 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010077 other upstream 3383703 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010097 other upstream 5361284 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 6188272 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 6195774 16415810 ~ 16434838 (-) False XLOC_005253

Expression Profile

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