XLOC_000053



Basic Information


Item Value
gene id XLOC_000053
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3718666 ~ 3720603 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003016
CGTCACTCAACACCTGCCAGCGAATCAGAAGCGCGAGATTTCGCAGATATGGGTCGTTTGGTATTGCACGTCTGGGTTTTTAGTTTACACATTATGAAgggaaaagttttgtttttacatgATGTTTACACACTTCTTAATGTTGATAATGAAATATAGGCATAGATGGCTCGAAAATGTGCGACCTGTAAGCAACATTAACAGAAAAGTGAAGATAAAATAGAAGAGAAACTCAGACCACTAAAGACTTGCTTTCTAGCAGTTCAATGGCTCTGTCCTTTGAACCACTGCCGTATCACATCCTGAATCTCCAGGACGTCCCTTCACCCCCTGCAGCTGAAAGAGCACACGCTCATATGAGTCCGGTCCTAATCTAGTGACCGGCCCTAATGATTGATTGCATACTGAGAAGAGCCGTCACCTCTGCTGCGAAAAAGAGCGCAGGAAATGCTCATCAAGACCCCAACCGAGAAACTGAGAACAGCTTGATTGAGCTAGACTTGTTAACTCCGAATAGAACATTTCTGTGCGTAGACTGTGTAGGCTACTAATGCTACATGAAATGTACAACAGCAAAACAACTTATTGTGAATATAATAgggatatttttaatttaaaaaaagtatagtAGTTCCCATAAACATATGATGtatcttatttaaaaataaaaatattattgaaaaaaacaTAAAGTCACCTCAACTG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003016 True 705 lncRNA 0.39 2 3718666 3720603

Neighbor


gene id symbol gene type direction distance location
XLOC_000052 gpc6a coding upstream 682647 2712956 ~ 3036019 (+)
XLOC_000050 farp1 coding upstream 1274456 2301958 ~ 2444210 (+)
XLOC_000051 CR352215.2 coding upstream 1315442 2403103 ~ 2403224 (+)
XLOC_000048 kpnb3 coding upstream 1419113 2260407 ~ 2299553 (+)
XLOC_000049 CR352215.1 coding upstream 1442924 2275605 ~ 2275742 (+)
XLOC_000054 CABZ01063288.1 coding downstream 39321 3759924 ~ 3760034 (+)
XLOC_000055 slitrk6 coding downstream 381138 4101741 ~ 4154332 (+)
XLOC_000056 FO744838.1 coding downstream 877457 4598060 ~ 4680477 (+)
XLOC_000057 NA coding downstream 1180857 4901460 ~ 5030155 (+)
XLOC_000058 spry2 coding downstream 1552878 5273481 ~ 5277583 (+)
XLOC_000044 NA non-coding upstream 1695021 2023409 ~ 2023645 (+)
XLOC_000043 NA non-coding upstream 1713034 2001716 ~ 2005632 (+)
XLOC_000034 NA non-coding upstream 2099352 1617203 ~ 1619314 (+)
XLOC_000059 NA non-coding downstream 1590876 5311479 ~ 5313595 (+)
XLOC_000064 NA non-coding downstream 1986367 5706970 ~ 5728684 (+)

Expression



Co-expression Network