G44275


Basic Information

Item Value
gene id G44275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10978646 ~ 10980295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU52327
TGCTTATTAGTACAGAAAAGGGGGAAATAATGAAGGTGGGAACTACAAACTTGAAGCAAGTTGTAAGCAATAGCAGCATTAccctccatgtttttttttttttttttttttaatcacagtttaACTACAACATTAGACAAGCACAGGTCCAAGTCAACAATCTGAAAACCTTGTCATGATAGAACCTGTCATTagttataaattaaaacataactTGGAAAAAGAAATCAATCCTTCATGTATATAGttatatgtagttttttttttttttttttttcacaacatgACTGAGTGGGCTGCAGATCCACCCACGGAGAATGAGCATGAAGCACAGGTGAATAAATAACTACCCAAATCTAGCACAGGAAATATATAAACATCTACAGAGAGTGTGAAACAGTCACCAGGACGCGGCTTCGCTTTCTCTTCTCCTCGTTCCTCAGCAGCTGTTTAGTGACATTATTATATCTGAAGGTCCTTTTAGAACAAGGGGTACAAAATGAGTGCAGTGAGCTAATGATGAAATGATCGACAGTCGACAGTGAGAGCAAAATAAACGTTCCAGGAGGACGACACTAGGAGGTTAGTATGCAAGCCTGGGATTAGTAAAAGATCAAAACAAATGGGTAGAAAAAGGCAAGCTAGAGAGGACATTCACTCCTGTTTTGACCTTGGTGCAGAAGAGATGAGCACAACACCAGAGCTGGAGCATTTACCTCTAAAAAGACGAGGGAGTGTTCTTTAAGCTCGTAGCCAAAAATCTTTACTTCCATTTCCCAACAACTGATCAAATATATTAGTTTAACTTGAACAAACTGGGGAAAGTGGTGGATCAGTTGCATTTATGACTGAGTTACAGTTACTGACTACATTCATGCACAGCTACAATCACAATGAAgtctatgaaaatgaaaacaaatatgttGCAAATATTTACCCAACTTTGATTAGAATGTcagggtcagagcacagggtcgcATGCAGCAAGCTGATGGGTTAAGAGCGTTAAGACAACCTTTCTGTCACTAATGCCTGGGTCACACTACATGATTTATACAATCCTAATGTTTGACAATGTGAGACGTGCCAGGTATGACAGACTGCACCGTTTTTCTGGCCTGGATCATGATTCGGGTCATCGAACCCCACGCTAGATTTTGccaagaaataaacactttcaGATTACGCTCATGAATCAATGATCCCAACTCTCAGAAGCTGGGAATTTGCAGAATTTCTCATAAACTGATATGACTTGGTGGATGACAATTTAGCTCATCTGTCATTGGTCTTTAATGTGATGTCAGGATTGCATTTTGACATGAAGCAGTGGGTGTTGCCCTACATTGCAGGCTAAATATTGCATGTttcatatttatgattatatcatagcactgttgaatgcttaAATCtaattagtcagaaggtgttggttcaTTTTATCTTGGGGAGAATGCAAGTTCGAATCCCAACACAATCCCACAGCAATCTGTGGCCGAGAGTCAAGAGAGCGAGATTGGCTGTGTTGTCTTGGTGAAAACtccctctcccctgtcaatcacagtgacgctagccaatcgtgggcatcagtgagcaaatgtatgtatgtagaagagggcagatatCAGGTTcgtctgagtgtgttacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52327 True 1650 lncRNA 0.40 1 10978646 10980295

Neighbor

gene id symbol gene type direction distance location
march5 march5,LOC107719203 coding downstream 51418 10894351 ~ 10927228 (-)
dennd10 fam45a,LOC106576813,LOC106604714,LOC107711433 coding downstream 116536 10856138 ~ 10862110 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding downstream 128933 10845031 ~ 10849713 (-)
polr1b polr1b coding downstream 181551 10785741 ~ 10797095 (-)
LOC113545523 cyp1b coding downstream 242749 10731531 ~ 10735897 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding upstream 2299 10982594 ~ 11010366 (-)
ccnj ccnj,LOC107562385 coding upstream 57674 11037969 ~ 11041301 (-)
blnk LOC108263522 coding upstream 74473 11054768 ~ 11094954 (-)
vent NA coding upstream 342425 11322720 ~ 11324343 (-)
vox ventx coding upstream 347334 11327629 ~ 11328847 (-)
G44274 NA non-coding downstream 223 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 22154 10953505 ~ 10956492 (-)
G44262 NA non-coding downstream 53388 10922309 ~ 10925258 (-)
G44173 NA non-coding downstream 161354 10816672 ~ 10817292 (-)
G44105 NA non-coding downstream 254978 10673346 ~ 10723668 (-)
G44582 NA non-coding upstream 406911 11387206 ~ 11387946 (-)
G44818 NA non-coding upstream 859157 11839452 ~ 11839822 (-)
G44820 NA non-coding upstream 931915 11912210 ~ 11914029 (-)
G44848 NA non-coding upstream 1027531 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 1261314 12241609 ~ 12242121 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 817123 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 970085 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1749762 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2124852 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2194848 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 728319 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1030636 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1164545 12144840 ~ 12152522 (-)
nin nin other upstream 1454814 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1544341 12524636 ~ 12534215 (-)

Expression


Co-expression Network