tmem254 (tmem254)


Basic Information

Item Value
gene id tmem254
gene name tmem254
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12144840 ~ 12152522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53378
CTAAAGAGACCGCTCTGTATTACAGTAGCTCTTTCTGGTAAACAGTCGGAGAGAGTTTCAGGCTTTAGACTGGAGGAGGTTTAACCGGGTTACAAATGGCTAAAAGTGATGGCAGCTCGTATTTCAGGAGGTGCAGCCTCTTCTGGATAGTGACTGTAACTCTGTCCATGGGTTACTACACAtgggCCGTGTTTTGGCCAGAGCAACTCCCTTATGACACTTTGGGTCCACTCGGTGCTCTCTCAGAGTATCTGGTCAAAGAATATCACAGTGTCATGTACAAGGGATGGTGGCTTGCTTGGGCAGTCCATCTGTGTGAAGCTCTGGTGGCACTGAAAGTATGCAGTGATAAAGGCATCGACAGTCCATCAACTCGGCTCCTGTGGTTTGTTCAGACTTTTTTGTTTGGCTTTGCGTCTCTGGGTTTGCTCCTCAAATACAAGGCAGGCGGCCGAGCCAAACGTCACTGAGCAGCTGCAGACATGCACTGCTCTGAAATGGAACACTATTTTCCAATGGATAAATCAGGATTAGAGCCTTTtaatcaaatacaaatatgcGGACCATATTTCCAAAAACAATCATGATGTAGAGCTTACACAGCTCCGTGAAACAGACTTGATATGACAGGGAGAGTTCTGGACAGTAACACAACCTCTTACAGCAACACTCCTTACaagaatatttttataaaatggaaGACTTAAATAATAACCACCATAAGCTAGGATTATTAGCTTTACTGTAGATGCTGTTCCAAGTTGGAGACCCAGTTTCAGAGCAATGAAAATATGTGCCTTCCACTCATACCCAGTTTTCAGGGTCTAATAATTTCTTGATAGGTTCCTGTGCATGTCATTGTCCATAACAGCATCTTGAGTCATCTGGTTAAAACTGTTTTAAGATTTGAATTTAAGGCCCTGTTGTTCCCTACACCGACTGTGACTTGGAGTTTAAGCTCTCATTGGGTGGGAGTTTCATCATTTTAGTTTGGCAGTTAGCAATTTCACAGAGACATGATTCACAGACTATAAACTATGCCTTCACCCACACAGATTATTGGTGCTGTCACAGATTAGAAAACGGGCCACCTGAATGGAAAATGGGTATGTCAAACATTGGGATAAAATTGGCAAACATGAGTAGGAAgttgttttaaaattgtattgagCACAATTGCTTTGGAATATAGAGAAGAAGTTGCTTCAGATGCCTTTGTGTTATCAGCCAAGCTTGAACACAATGTCAGTCAGCCATATTGACATGAAAAAGATTCTGGCTCTCATctgattttatatcattttaccCTTGATCAGGTCCTCactgaaaaaaagttttatattaataataagacCTGTGGCAAATTAGAGTGACAAATACTACTCAGTTTAGTATTTAAGTAATATTTGTTAAAGTAAGTTGTTGAGCAGCCCTTATGATAGGAACTCCTGTTTGTGATTACTCTGTGATGTAGGTCAGCTTCTTCCAAGAAGTCCAATATTAAACTGGCTGAGGCTGGTCTTAACCGGACTGTTTTCCAATATGCCCTCAATTACTCATAGAACTTGGGAGTGAATACTTTTGCATACCAGATGGCTGCTTGTTTAAACACTATACCAAACAAAAGAAACCTATGCAAACTATTTGGTGCATTTTCAGGTTAGATTTCCTGCAGAACCTGAGTCATGTAGTCCATCTATATCACAGCAGGGCACGAGTCTGACATCCTCTATTAATCACAGCACAGTGGCTGGAGTGAAACATCAGGTTACAGGTTTTACTGATGCGTGATGCACAGCATTCCATATACTGAAGaagaatttaaattatttaataggTTTATATGAATAAGGAATTAATTAAATGAGATTTCTTAAATTTATTATAGGTTATATGCAGTggttttttaattatattaactgTTCTAGTTATTACTCAGATGGTGTGATGAGGTTTATCa
>XM_026944921.2
tCGTTTCCGGTTGCTGCTAAAGAGACCGCTCTGTATTACAGTAGCTCTTTCTGGTAAACAGTCGGAGAGAGTTTCAGGCTTTAGACTGGAGGAGGTTTAACCGGGTTACAAATGGCTAAAAGTGATGGCAGCTCGTATTTCAGGAGGTGCAGCCTCTTCTGGATAGTGACTGTAACTCTGTCCATGGGTTACTACACAtgggCCGTGTTTTGGCCAGAGCAACTCCCTTATGACACTTTGGGTCCACTCGGTGCTCTCTCAGAGTATCTGGTCAAAGAATATCACAGTGTCATGTACAAGGGATGGTGGCTTGCTTGGGCAGTCCATCTGTGTGAAGCTCTGGTGGCACTGAAAGTATGCAGTGATAAAGGCATCGACAGTCCATCAACTCGGCTCCTGTGGTTTGTTCAGACTTTTTTGTTTGGCTTTGCGTCTCTGGGTTTGCTCCTCAAATACAAGGCAGGCGGCCGAGCCAAACGTCACTGAGCAGCTGCAGACATGCACTGCTCTGAAATGGAACACTATTTTCCAATGGATAAATCAGGATTAGAGCCTTTtaatcaaatacaaatatgcGGACCATATTTCCAAAAACAATCATGATGTAGAGCTTACACAGCTCCGTGAAACAGACTTGATATGACAGGGAGAGTTCTGGACAGTAACACAACCTCTTACAGCAACACTCCTTACaagaatatttttataaaatggaaGACTTAAATAATAACCACCATAAGCTAGGATTATTAGCTTTACTGTAGATGCTGTTCCAAGTTGGAGACCCAGTTTCAGAGCAATGAAAATATGTGCCTTCCACTCATACCCAGTTTTCAGGGTCTAATAATTTCTTGATAGGTTCCTGTGCATGTCATTGTCCATAACAGCATCTTGAGTCATCTGGTTAAAACTGTTTTAAGATTTGAATTTAAGGCCCTGTTGTTCCCTACACCGACTGTGACTTGGAGTTTAAGCTCTCATTGGGTGGGAGTTTCATCATTTTAGTTTGGCAGTTAGCAATTTCACAGAGACATGATTCACAGACTATAAACTATGCCTTCACCCACACAGATTATTGGTGCTGTCACAGATTAGAAAACGGGCCACCTGAATGGAAAATGGGTATGTCAAACATTGGGATAAAATTGGCAAACATGAGTAGGAAgttgttttaaaattgtattgagCACAATTGCTTTGGAATATAGAGAAGAAGTTGCTTCAGATGCCTTTGTGTTATCAGCCAAGCTTGAACACAATGTCAGTCAGCCATATTGACATGAAAAAGATTCTGGCTCTCATctgattttatatcattttaccCTTGATCAGGTCCTCactgaaaaaaagttttatattaataataagacCTGTGGCAAATTAGAGTGACAAATACTACTCAGTTTAGTATTTAAGTAATATTTGTTAAAGTAAGTTGTTGAGCAGCCCTTATGATAGGAACTCCTGTTTGTGATTACTCTGTGATGTAGGTCAGCTTCTTCCAAGAAGTCCAATATTAAACTGGCTGAGGCTGGTCTTAACCGGACTGTTTTCCAATATGCCCTCAATTACTCATAGAACTTGGGAGTGAATACTTTTGCATACCAGATGGCTGCTTGTTTAAACACTATACCAAACAAAAGAAACCTATGCAAACTATTTGGTGCATTTTCAGGTTAGATTTCCTGCAGAACCTGAGTCATGTAGTCCATCTATATCACAGCAGGGCACGAGTCTGACATCCTCTATTAATCACAGCACAGTGGCTGGAGTGAAACATCAGGTTACAGGTTTTACTGATGCGTGATGCACAGCATTCCATATACTGAAGaagaatttaaattatttaataggTTTATATGAATAAGGAATTAATTAAATGAGATTTCTTAAATTTATTATAGGTTATATGCAGTggttttttaattatattaactgTTCTAGTTATTACTCAGATGGTGTGATGAGGTTTATCatagtgtttttaaattattttttttttttctaaataaaacagTGATTTAACCAGTA

Function

symbol description
tmem254 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; cranial ganglion; and trigeminal placode. Orthologous to human TMEM254 (transmembrane protein 254).

NR:

description
transmembrane protein 254

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53378 False 1960 TUCP 0.40 4 12144895 12152506
XM_026944921.2 True 2031 mRNA 0.39 4 12144840 12152522

Neighbor

gene id symbol gene type direction distance location
LOC113542467 lrrc27 coding downstream 114696 12021991 ~ 12030144 (-)
LOC113540195 inpp5a coding downstream 171335 11817728 ~ 11973505 (-)
valopa LOC100305024,LOC108426856 coding downstream 358205 11772007 ~ 11786635 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding downstream 494638 11595230 ~ 11650202 (-)
LOC113544831 adgra1 coding downstream 578600 11389875 ~ 11566240 (-)
srfb srf coding upstream 3695 12156217 ~ 12186613 (-)
ptk7b LOC108263634,LOC108426849 coding upstream 37695 12190217 ~ 12289852 (-)
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding upstream 139265 12291787 ~ 12330928 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 190713 12343235 ~ 12356768 (-)
map4k5 map4k5 coding upstream 205750 12358272 ~ 12401487 (-)
G44848 NA non-coding downstream 136811 12007826 ~ 12008029 (-)
G44820 NA non-coding downstream 230811 11912210 ~ 11914029 (-)
G44818 NA non-coding downstream 305018 11839452 ~ 11839822 (-)
G44582 NA non-coding downstream 756894 11387206 ~ 11387946 (-)
G44275 NA non-coding downstream 1164545 10978646 ~ 10980295 (-)
LOC117596852 NA non-coding upstream 89087 12241609 ~ 12242121 (-)
G45236 NA non-coding upstream 137805 12290327 ~ 12303541 (-)
G45249 NA non-coding upstream 215991 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 474524 12627046 ~ 12627481 (-)
LOC117596888 NA non-coding upstream 475155 12627677 ~ 12628388 (-)
pwwp2b pwwp2b other downstream 123372 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 436156 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1983317 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 2136279 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 2915956 9224876 ~ 9228884 (-)
nin nin other upstream 282587 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 372114 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 478691 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 486730 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 487008 12639530 ~ 12639602 (-)

Expression


Co-expression Network