cdkl1 (cdkl1,LOC105890986,LOC107705442,LOC107602970)


Basic Information

Item Value
gene id cdkl1
gene name cdkl1,LOC105890986,LOC107705442,LOC107602970
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12343235 ~ 12356768 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944957.2
tgttgctgtgtgagTGAAGCGCTGGGTTTTGGAGATGGTGTGGGTTTTGTGGTGTCGCTCTGCGCATTCACTGCGCTTTGAGAAGGTGGAGCCTGTGCGCTGTTCCTATGGGGACCGAGGCGCATGTAAATGCCCAGCTCCTTCAGGCCACctcacacacccctacacactCCCACGggccccccacacacacacacaaacacacacacacacacgggcactGAGCTCTCACTGGCCCACAGCAGCACCACCTGCACGGCGCACTTTGGAGCGAGCAGGCGCAGTCAGGTTGATCAGTGCATgagggaggtggaggtggtGCACCAGAGTGCTCTGGGATTCCGCTTGGCTTCACAGCATGGAGAAGTATGAGAAGATTGCAAAGATCGGAGAAGGTTCATACGGAGTCGTGttcaaatgcagaaataaagacACGGGACAAATCGTCGCCATTAAAAAGTTCGTGGAGTCAGAGGATGACCCGGTTATTAAAAGAATTGCACTCAGGGAGATCCGGATGctcaagcaATTGAAGCACTGTAACCTGGTCAACCTGATTGAGGTTTTCAGGAGGAAGAGAAAACTGCATCTAGTGTTTGAGTACTGCGATCATACGGTGCTCAATGAGCTCGACAGATATCCCCGGGGagtTCCAGAGCCTCTGGTTAAAAGCATCACCTGGCAAACGCTACAAGCTGTTAACTTCTGCCACAAACAAAATtgcatCCACAGAGATGTGAAGCCAGAGAATATACTCATCACCAAACACCAGGTCATAAAGCTCTGTGACTTTGGCTTTGCCAGGATCCTCAcgggGCCGTGTGATTATTATACAGACTACGTGGCCACTCGGTGGTACCGGGCTCCGGAGCTGCTGGTGGGAGACACTCAGTACGGCCCTCCGGTGGACGTGTGGGCGGTGGGTTGTGTGTTTGCTGAGCTGCTCTCTGGCGCTCCTCTGTGGCCGGGCAAATCTGATGTAGACCAGCTTTATCTCATAAGGAAAACATTAGGTGATTTGATCCCCAGACACCAGCAGGTGTTCAGCAGTAACCAGTTCTTCAGCGGAGTGTGTGTTCCTGAACCACAAGAAATGgaaccCCTGGAGCAAAAGTATCCAAACATCTCTTTCCAGGCATTAAGTCTAATGAAGggttgTCTGCATATGGATCCTGCAGAGAGGTTAACCTGTGAGCAGCTGCTGGAGCATCCGTATTTTGACAGTCAGCGGGAGGAGACAGAGAGCGTGATGCGAGAGCATGACAGAGCGAAGAGACGAGCACGGCAACCCCGTAAACACCTGCCCCCGGGGTATTTACCCCAGCTGACTGGCAGCAGTATCTTCCCAGCGGTGGACAACAGGAAGTACTACAACAACATGCGTAAATTCAACTACCATTTCCCCAACATCTAGTTCTTCACGCTGGAACACACTTTATACACCCCCAATCTGCCCCAAACACTTTCATACACTTTCCTATTTTGGTTTCGCATATACTCACCTACCTTACGTCTTGCTCAGGAACAGAAGTCGCTGAGACAGTAATGCTGGCTGCTCCAGTCACAAAGTGTCCTCGTTTTCTGTAGAAAGAAAATCTCCACCACTCATCTACAGCTGTACTGTCAGTCAGTTCACTGCTGTATCTTTTTGTATACGACTCATCAGACCACTTGTGTACTCTGTGTGATTGACAAAGAGCCCTGCtctgcatgtacacacactgctctgagTGTGACACTGCCTTTCTGATTGCCAAAGTGCTGCGTGACGTGACACAGGGAAAACAGATTGATTGTCTCATATACACAGCTAACGAAGACCTTGGTTAGTGAGAGGATAACTAAGCTGTAGGTAATTAGCATAAAACGTGCAGGAATCAAACAATTCCtctattactgttttttttttttgtacatttatgtttttctgtctctttatatTGTTAATCTCAGACCATCTAACTTCCTGTGACAGACggaggaataaaaaacattccTTCTACTAATATTATTACTCTAGGTCTATGTTCTAAGTGTTGATTTTGGAGTGAATCGCATTTATGAAtcatatgatttaaaaaaaagagagagagagagtataactTGTGTTTTTGATGGCTTTTATTAGAgccttaaacatttaaaacatttaatgataTTATTGTTGCCTTGACAAGTGGTGCTAATGATCTTCTGGCCATTGACTTGCACCCAATGCCAAACTGCTAAAGACACAAGCCCATTCCCCAGCCCTCGGACTCACCTTGTTACCTTCAACACACCCTCTTTCCCTGTAAATATCTCATGACATTTAGTTCTGCTGGTTTTCCAGTAAGACAGGCTCAACAGGGGAGTAAATACGGGAACAAGAAATTCTTGCTCTTTTTGTAtgtgatttattaaagagcTTTCAGCAATGAAA

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

NR:

description
cyclin-dependent kinase-like 1 isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944957.2 True 2422 mRNA 0.47 10 12343235 12356768

Neighbor

gene id symbol gene type direction distance location
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding downstream 12307 12291787 ~ 12330928 (-)
ptk7b LOC108263634,LOC108426849 coding downstream 53383 12190217 ~ 12289852 (-)
srfb srf coding downstream 156622 12156217 ~ 12186613 (-)
LOC113542467 lrrc27 coding downstream 313091 12021991 ~ 12030144 (-)
LOC113540195 inpp5a coding downstream 369730 11817728 ~ 11973505 (-)
map4k5 map4k5 coding upstream 1504 12358272 ~ 12401487 (-)
sav1 sav1,LOC106517965,LOC107602930 coding upstream 65513 12422281 ~ 12431644 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding upstream 115759 12472527 ~ 12485626 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding upstream 128981 12485749 ~ 12507596 (-)
LOC113537655 LOC108262224 coding upstream 189110 12545878 ~ 12553072 (-)
G45236 NA non-coding downstream 39694 12290327 ~ 12303541 (-)
LOC117596852 NA non-coding downstream 101114 12241609 ~ 12242121 (-)
G44848 NA non-coding downstream 335206 12007826 ~ 12008029 (-)
G44820 NA non-coding downstream 429206 11912210 ~ 11914029 (-)
G44818 NA non-coding downstream 503413 11839452 ~ 11839822 (-)
G45249 NA non-coding upstream 11745 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 270278 12627046 ~ 12627481 (-)
LOC117596888 NA non-coding upstream 270909 12627677 ~ 12628388 (-)
LOC117596890 NA non-coding upstream 271704 12628472 ~ 12629256 (-)
G45305 actc1,LOC105021204 non-coding upstream 357916 12714684 ~ 12717329 (-)
tmem254 tmem254 other downstream 190713 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 321767 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 634551 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 2181712 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 2334674 9999959 ~ 10008561 (-)
nin nin other upstream 78341 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 167868 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 274445 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 282484 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 282762 12639530 ~ 12639602 (-)

Expression


Co-expression Network