trnak-cuu_1


Basic Information

Item Value
gene id trnak-cuu_1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12639530 ~ 12639602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnak-cuu_1
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-cuu_1 True 73 tRNA 0.62 1 12639530 12639602

Neighbor

gene id symbol gene type direction distance location
LOC113537655 LOC108262224 coding downstream 86458 12545878 ~ 12553072 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding downstream 131934 12485749 ~ 12507596 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding downstream 153904 12472527 ~ 12485626 (-)
sav1 sav1,LOC106517965,LOC107602930 coding downstream 207886 12422281 ~ 12431644 (-)
map4k5 map4k5 coding downstream 238043 12358272 ~ 12401487 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding upstream 5013 12644615 ~ 12663466 (-)
trnak-cuu_2 NA coding upstream 28891 12668493 ~ 12668565 (-)
trnae-cuc_9 NA coding upstream 29218 12668820 ~ 12668891 (-)
zgc:66472 LOC108263827 coding upstream 35151 12674753 ~ 12683749 (-)
urb2 urb2,LOC107552917 coding upstream 46697 12686299 ~ 12696128 (-)
LOC117596890 NA non-coding downstream 10274 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 11142 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 12049 12627046 ~ 12627481 (-)
G45249 NA non-coding downstream 270181 12368513 ~ 12369349 (-)
G45236 NA non-coding downstream 335989 12290327 ~ 12303541 (-)
G45305 actc1,LOC105021204 non-coding upstream 75082 12714684 ~ 12717329 (-)
G45324 LOC108263641 non-coding upstream 80027 12719629 ~ 12721353 (-)
G45323 NA non-coding upstream 81999 12721601 ~ 12724180 (-)
trnal-cag NA non-coding upstream 94598 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 134843 12774445 ~ 12776116 (-)
trnae-cuc_8 NA other downstream 207 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 6112 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 105315 12524636 ~ 12534215 (-)
nin nin other downstream 174467 12435109 ~ 12465063 (-)
tmem254 tmem254 other downstream 487008 12144840 ~ 12152522 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 365884 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 790395 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1542289 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2140254 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2773311 15412913 ~ 15416483 (-)

Expression


Co-expression Network