zgc:66472 (LOC108263827)


Basic Information

Item Value
gene id zgc:66472
gene name LOC108263827
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12674753 ~ 12683749 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945490.2
tagtgtgtgtttctatCCGGATCCTTCACGAGTTGCACACAATACGCTTGAAAAATTCTTTAGCGGGCCAGGAAAACCACGACGGGATCGATCAATAAACGGCGCTTgtagtttatttgtgtatttggggAAGTTATCATGGAGGTGGAAGACCCTATATCTGCCAAATTTCGGACTATCGTTGAGGCACTCATGATAAAGACAACGTCAGAGATTGTGAAGGTTTTTGCTGACGTCATGTTGGAGACGAGAATGGAGATCTCTCGTAGCTGGAGGGAAATTGATGACCTGAAGCAGGAGTTGgaacagagagaaaagcagcGAGCAGAGTCCAATTTCAGAAGTCAAATGACTCAAGTGACTTTCAAAACCGAAGAGGATGACGTGGTGGTGTCCCAGCAGAGTCCTGTGATTCTTGAAAGTACAGAAAGCAGGGGTGAAGTGCAAATATCTGAAGATGCCACAGTTGAGGAAACGGACACCGGACAGAACAGCGTATCAGGTCTTGAACAAGCAGCTCCAGAAATTACAACACGGGaaacatcTGTCCCAGAGGCTCAGGTGACTCAGTTAGAAGTTAGACATAAAAGAGGTCGTCCATCTACATCCCATACAGTCTCAAAGCATCAAACATCTGTCCCAGAGGCCCAGGTGACTCAGTTAGAGGGTAGACATAAAAGAGGTCGTCCATCTACATCTCATACAGTCTCAGCGCATCAAACCTCTGCCAGAGAGACCAAAGTGCTGCCAAACTCTCCAATCCAAGCCCTTTCAGTGGCCAGCCCCCAGAAACCATCCTCTAGCACAGACAGTCTAATTCTGAGTAATAGGTCACAGGGAAAGAGGGCAGTGGTGTCAAAgaaaaaatacatgcaaaaaagaaatactgCCACACAAAGcaacagtgtaacacacacactccgtgaCAGGCACCTCCTGAGTAGCCAGAAACCTTGTCTGTGCTGCACTTCAGGCCAATGCCCAGAGCAACAACACAAGCTGAAAAAGAATTCACCAGTGGCTTCATGTGGGTACACCTGCACTGACTGTGGGACAAAGTTTCAGGAAAGGACAGAGTTTAAGAGCCACAAGTGCTTCAGCAAGCCTAAGTGCAACAGGTGTGGACAGACGTTCACCAGTCTGAGGACCCTGGCCAGTCACAATCGGCGTGTACCCCCTGCATTGAAGAAGCCATTCCCATATAAATGCTACCTCTGTGATCACATGTTTGCTACTCGGTGTGGCTGGAACATACACAAGCGGATCCATGCCCATGGTCATGTTTCTGAGATTGGTCAGCAAGATATCCCCAGCCCCTCCCATTCATTTCCAGTGCCTAAAGAACTAAAGGCCAAGGTGGAGGTTCGCTTGGAGAGAATTTCAGAGGCTCAGCTGGAAGCTGCATTATTTCCTAAAGGTTCGTTGTTGCTAGATGATAAAAACAGTGTGAGCTCTGTGGGGCCATCCAAGAACCTGTCCTCAGTCGTGGAACCCACACCATTTACAGGGAGCTCTAATAAACCATCTACAGGCACAACCAAGAATGCATCCATGTTAAATAAGGAATCTGTATCTAACAGCTATACAGAACTTGTCATGGAATGCCAGGCTTCCAGTTCAGGGACTGAATCAAGTGAAAGTTTTAGGCAGTCAGATGATGGGACAGAAGATTCAGTTTTTCCAACTGCCGCTAGCAAAAACCAGCCAGCAGAAAAGTGGACCCAGTCAAAGTCATTGATTGCACGTAGAGTTGATAGTGTGGAGTGTGATGAAGGTTCATCCAGTGCAAGTGAAGACTTACCAAAAGGATTAAATTCACTTTCACGTAAACGGAAGATGTCAGattGCAATCATGACATGTACAAtggtgtgtttcctgttgaGAAAATTCTTAGATGGAGAAATACAAAGggtCGAAATGAAGTCAGAATCAAGTGGATGCCTTGCTCATTATGtggggcaaaatggaaaaacacatGGGAGCCAGCAGAAAGCTTTATCTCTTATAAAGATGGCAAAAATGAAGAAACTGGAAACATAtacaaacagaattaaaaagTGTGGTGACATTTAATGTTTGGGCTCACTGTACAAATGGCATATGGCTTAGGAACTGAGAATGTTGGTCGATTTACTGATTTTAGATTGAGTTCTGTGCTTTGTGTTTGGGCACACAAAAGGCAAGAACTGGATTCTAGAGTAGTAGTACCATGGGGTGTATTATTCTACTGACATGGTACTGCATGAATGCTACCGCATGCTCTGGTGTTGAAACCCTTTCCAgtactttttagcaaaatcaCTGGTCTTATGTTTGCTAATTTCTGTAAACAGATATATGATGCTGTGAGAACAGCTTGTCCGACATGTATGTAaaacagtaattaattaaagataGAATACATGATTAAGATTAAATTATTTTAGGGATTCTGgcatattaaatgaaattgtaTACAAAGCAAACAGCAAATGAGTCAGGTCTTAAGACATTTTGAATTGCTGCACAGAATCCTGGAACTATACTGCATATTTAATAAtctgtgcttttctgctcacgtAGAAGTTTTATAATCTAATGTGCAACACCCTTAAGTAAAGATTTTGATTAATTGCAAGCATACAGGCCACGAGATCCACATGTTCTGTTCCTTTCAGTTCATTTGTTGGTTTACTGCAGCACATGAAAGTTGGTTTGGTTCCTTTGTGGTAAGAATCTAGTTTTGTTAATCATCATTTTTTATTGCTTGATAAACTATAGGCTGCATCACCTAATAAAAGGCTTTTGTGTTTAAGAGCATTTCTGAATTCAACTATAAAGATAGCAATATTAAACATGGTTGTACAGTCAATGATGTCCTCAGCATTGACTTTGTTTGAGATTatgaatttgttatttttgtggTACTTGGGAAAGCATTGCATTACATGGTTTTATTGTGTACATTGCTTTGGGTGACTGGtttagtattaaatatttaatgctatTACTGTTCATCATAAGGTACTTGATATCCTCTATGAATTCAGAGTaatacatgtttgtgttttaaaatgttgaataGTAAGTGATCAGTATTCCCAAAATTCACGTGTAGAAACATCCTGTTTTGTCCTTTTAAATTTTAAGAGCATTTTGATCAGCTGATCGAGCTAATGGCAGTGCTTATGTGTAGCTCCACCTtagtgaaaaatataaaaatatatttatatacatttctgactgttcagctgtttttttgtttttttttttcacgtcaattttttaaaacgtgtatcctttttttaattgcttggtttttaatttttatttttttttatttttagcatattATCTAAAAAATCTTTGCTGATGACTCCAGgttgctgcaaaaataaatggaatgtCAGTTTGAAAGTTGCTCTGTGGTCTagtctaatatgttattgttcaATATCTTCGACTTTGTGAAACTGAGCAAGCATATCCTGTAGCACATGTTCATGTTATGGAAACTATAAAATGTATCTTCACTCTTCATTTTATGGAAAATAGTGCCTCTCTTCTGTGATGTAAATTTTGCTCTGAATTTTGTGAAGTGGTTGCGTATGTCTTTGTAGCTATGTCTTCATTACTGCCTGTGGTACTTCAGTTGATGCTTGGCAAAATGTTAACAAATTGCCATGTTTATAGGGCACTAGTGTGGGAGAATGCATGATTAAAATAAAGTTCCAAATTCAAATTGGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108263827

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945490.2 True 3728 mRNA 0.40 7 12674753 12683749

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_9 NA coding downstream 5862 12668820 ~ 12668891 (-)
trnak-cuu_2 NA coding downstream 6188 12668493 ~ 12668565 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding downstream 11287 12644615 ~ 12663466 (-)
LOC113537655 LOC108262224 coding downstream 121681 12545878 ~ 12553072 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding downstream 167157 12485749 ~ 12507596 (-)
urb2 urb2,LOC107552917 coding upstream 2550 12686299 ~ 12696128 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding upstream 40743 12724492 ~ 12732902 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding upstream 67591 12751340 ~ 12758155 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding upstream 78812 12762561 ~ 12769000 (-)
cep68 cep68 coding upstream 99608 12783357 ~ 12790444 (-)
LOC117596890 NA non-coding downstream 45497 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 46365 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 47272 12627046 ~ 12627481 (-)
G45249 NA non-coding downstream 305404 12368513 ~ 12369349 (-)
G45236 NA non-coding downstream 371212 12290327 ~ 12303541 (-)
G45305 actc1,LOC105021204 non-coding upstream 30935 12714684 ~ 12717329 (-)
G45324 LOC108263641 non-coding upstream 35880 12719629 ~ 12721353 (-)
G45323 NA non-coding upstream 37852 12721601 ~ 12724180 (-)
trnal-cag NA non-coding upstream 50451 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 90696 12774445 ~ 12776116 (-)
trnak-cuu_1 NA other downstream 35151 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 35430 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 41335 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 140538 12524636 ~ 12534215 (-)
nin nin other downstream 209690 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 321737 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 746248 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1498142 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2096107 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2729164 15412913 ~ 15416483 (-)

Expression


Co-expression Network