rhoua (rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528)


Basic Information

Item Value
gene id rhoua
gene name rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12751340 ~ 12758155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936811.2
TGATGTCATCCTGTTGGAGTAACGCGATGGGGCTGGATCACATGGTCCAGGAGAGGAGGAGTGGACCCTCACCATCCTCACTCCAAAACTGAGTCCAAGTTTGTGTCTGTGCCCTACGCACTTTGCTCGCTTTTAGGCGTGCCTAAAATTAATTGGACTAATTTTTTGCATATGGATATTACTTTAGCGTTCACGGACACGGCAGAGATATCTCATCACAGACTAGGTCCAAGCATGAACGCATATGGACTGGAGAAATCAGGGTTAGCCTAACAGTGTTGGGCTCTGTGTGTGCAGCGATGCCTCCGCAGGGTGTAGGGGAGTATAAACCCGTGTCAGGCTCGTCAGTGCCGCCGGTACCACCGCGCAGATTCAGGAGTAAAGATGTGGCCAAAAGGAGCCGCTGGGGCTCGGCGCCGGAGCGCAGGGTGAAGTGTGTGCTGGTTGGAGACGGAGCTGTTGGTAAAACAAGTCTGATCATCAGTTACACCACCAACGGCTACCCCACGGAGTATGTCCCAACGGCTTTTGATAACTTTTCAGCGGTGGTCGCAGTTGATGGCAAGCCTGTGAAACTCCAGCTGTGTGACACTGCGGGCCAGGATGAGTTTGATAAGCTGCGACCTCTGTGCTACACCAACGCTGACGTCTTCCTGTTGTGCTTCAGTGTAGTCACACCATCCTCGTTCCAGAATGTCAGAGAGAAATGGGTGCCTGAGATCCGACGGCACTGTCCACGCACCCCTATCCTGCTAGTGGGGACCCAAGGTGACCTCCGGCAGGACGTCAACATTCTCATCCAGCTGGCCAAGTACAAAGAGCGTCCAGTGGAGCCACAagaggcctgtgtgtgtgctgaggagGTGCATGCTGTGTCTTATATGGAGTGCTCAGCACTTACCCAGAAGAACCTGAAAGAGGTGTTCGATGCAGCAATTCTAGCCAGCATTCAGAACATAGACAGCCAGCAGCAAAGGTTGATGAAACGCACACCCAATAAGATGAGGACGCTCTCCAAGTCCTGGTGGAGGAAATACTGCTGTTTGGCGTAGAAGGACAAGAGGGATATTCACTCTTGGAGGTTTTAAGTATGGACTGTAAGACAAAACCGAAGGCTTTAGGGGTTGCTGTAGTAATTTATGAACAGAGATTAAAATTATATTGAAATGTGATGGGACATAGTGCAGACGAGCAGGATAAGTGAAATGAAAAGATTCTACAGACATTAACAACACTTATCCATCCTTTGCAGTGGAAAATGCAAAGTTGACTCTTCAAATGAGTTGCTCGTGTCTAGTTTCACGTTCCTGCTCCAGCcagtgtttttgctttgtcttgAATAACAGAGAGCAAGGAGAAACAACCATGCAATATAGCATTGCAAAAGAGAGCCACATGCAATATAGCATTGAATACCTTTTATTGCTGTTGAATGAACTCATAAAATCATCACTGCAGGTGCAGTTAATTCAACATTGGTGTTTTATTATGCAGCAGATCctctctaacactaacactaaatTTAGACTACTCAGCCTACACTGTGAAATAACAAAGACCACTTGGGTGGTCCCAGATAGAGGACAATAGTCCACCAATATTTATGCGCTGTCCTTCTTTTACAACACAATTTGTTtctaaattttaattaaactacCTGGACGAACAGCTTTCCTCAAGCTGGAATATCACGATTTCCTGTTGGCTAGCCACAAAGACCTGCTTCAGTCAAGAGTTACTAAAGTGTAAGTGTATTCTAGTGCACTATCAGTAGTTTGGCATCGGTTTGTTTTTAGCGATCTGTGAGGTTGAAGGACAGCCCAGTTCCAAAAcagctgaatgaaaaaaagtctAGTTTACTTTATGACTTAATCCATTCAAAACATGAGGTCATGGTCAGTAAGTGAGTATTAAAGAGgcaagttaatatttttgtatgtacTGCATGTTCTCTCATGCCAGAAGTGCTTGAATTGGAAAAACGATGTTTGCTTTCTATGTCACTAGACATTGGCTGTTTATCTGTCATGAAGATAAGGTGTACAATAGGGGTTAGTGTTTAATACAGGAGTTTCCCTTGAAATTACAGATCGATATCTCACAGAGCTGAAGTTTCAGACAGCCTTGATAATGCTGATAAATTTGAAtgtattgctttaaaaaatcattatagttatatccagtgtgttttatttacaatttctgtatttttatgtcCATTTCCATAAAAAAATACCAGTTCTTCATAAATTCCATACAGCAATCTAGCAACCATGAAACTATGAAAGCTGGATATTAAAGTGTATAAGTAGCCTGAaattatatgatatatacagaaaaatgtgataaagcatGTAGAGAATGTccaaaatttatttctgtatagctCAGGTAAAGCTGTATCATACAGGTTTTGTTTAATCTAGAACAAGTGACCCTAGCAGATTATATTACTTACCTGCTATTACACTTTGAATGTTATATCACAAAAGAAGTTATGGTTTAtttcaatcatttttattttctttctttctttctttttttttttttttacaaagaaatcAAAATCATATTAATAGCCAATAACATTGGCGATTAcggttattaataataacagtgcCATTGTTTATTAGGAATCTGTCTCCATGACTTGTATCTGAATTTTATACGCATGACAATGTCTATGAAAAGACATCAGTATAACTTTGTGCCTGGTCTCCTGTTGAGACACCTCAATCTGATGTCATGATAAACACTACAGATATGAAGCACAAGCATCATTTATTGCTCAACATTTCCCCAGTTGTTGTAAACCCTGGAGCTTTATCCTCGGTAAATAATTGATTAGGTCCACCCACataggatgaactggaaaagTCACCTGCTGAAACGGGACATGAGCAAGTGAAAATGGAGTGGCACTGAATAGAGAGGTTAAAGTTTCACAAGATAAGCAGCGGTAGACACCGGAGTACCAGTAAGCCTGCCCTTCCCAACATGCTTATATCAGCAATGAACTGAAACTGATGTCTCTTTGAAAGTTGCCTTCATatactaaaaaacaaaaatagctcCTCATGTCTACCATCCATAAGAGTGTAAGTGAATGTGGAGAGATGGAGTCTTTGGTTTCTGAATGTGAAAAACTGAATACTGTAACTGTACATGTGAAAGAGAAAGCTCAATGAACACACATACAACTGGAAATAAAGGTGCTGTTAAAAGATTTTTGAACACAATAGTTGGTACATTGCAGTCAACATGTTTCAAATGTAATTGTGAAGTTACATAATGTATGAATTGTGTTTGACACTGGCATTTTGCTAATCTTTGAATTGAATCAAACTGAATGTTGGTAAAAGGATGAATGTCAGTGTTGAATGCTACAGTACAATTAGCTTTTGTTGGGTACATTTCTTTATTGTCAAATTGCTTGCAACACTGTGAACTGTGTATTTTTGGGGGTAATGAGCTTGTTGCAAGATGATGTAAGATTTACAGTAGATGAAGATATTCTCAGAACCTGGTCACAATCTGGCGGGACATGAGATGAGATAATAGCACAGGAATGTATACAGATTGTtatcctttttaaaataaagatgcaAAATATC

Function

symbol description
rhou Predicted to enable GTP binding activity and GTPase activity. Involved in cytoskeleton organization and regulation of cell shape. Predicted to be located in cytosol and plasma membrane.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoU

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07865 RHOU, WRCH1; Ras homolog gene family, member U

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936811.2 True 3614 mRNA 0.40 3 12751340 12758155

Neighbor

gene id symbol gene type direction distance location
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding downstream 18438 12724492 ~ 12732902 (-)
urb2 urb2,LOC107552917 coding downstream 55212 12686299 ~ 12696128 (-)
zgc:66472 LOC108263827 coding downstream 67591 12674753 ~ 12683749 (-)
trnae-cuc_9 NA coding downstream 82449 12668820 ~ 12668891 (-)
trnak-cuu_2 NA coding downstream 82775 12668493 ~ 12668565 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding upstream 4406 12762561 ~ 12769000 (-)
cep68 cep68 coding upstream 25202 12783357 ~ 12790444 (-)
slc1a4 slc1a4,LOC107725464 coding upstream 33425 12791580 ~ 12810514 (-)
si:ch211-217g15.3 NA coding upstream 117059 12875214 ~ 12877240 (-)
znf511 znf511 coding upstream 154655 12912810 ~ 12917062 (-)
trnal-cag NA non-coding downstream 17058 12734200 ~ 12734282 (-)
G45323 NA non-coding downstream 27160 12721601 ~ 12724180 (-)
G45324 LOC108263641 non-coding downstream 29987 12719629 ~ 12721353 (-)
G45305 actc1,LOC105021204 non-coding downstream 34011 12714684 ~ 12717329 (-)
LOC117596890 NA non-coding downstream 122084 12628472 ~ 12629256 (-)
G45340 NA non-coding upstream 16290 12774445 ~ 12776116 (-)
G45391 NA non-coding upstream 50879 12809034 ~ 12809389 (-)
G45409 NA non-coding upstream 88352 12846507 ~ 12846713 (-)
G45415 NA non-coding upstream 100819 12858974 ~ 12862052 (-)
G45395 NA non-coding upstream 107953 12866108 ~ 12868456 (-)
trnak-cuu_1 NA other downstream 111738 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 112017 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 117922 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 217125 12524636 ~ 12534215 (-)
nin nin other downstream 286277 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 247331 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 671842 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1423736 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2021701 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2654758 15412913 ~ 15416483 (-)

Expression


Co-expression Network