G45391


Basic Information

Item Value
gene id G45391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12809034 ~ 12809389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53638
TTGCTCACAGAAGTTGTTGCAGTAGTAGTGTTGCTGTGTCACTTACCCCGGTTTTAAATGATCCGCTTTAGCAACTCATGTGGCGACTGCTCTGAAGTAAACTACTGCACTGTACACGCGATCGCGAACTGCTGCTGGATTTCACATGGCACTTTCTGGATGTAATCCGTCATATCATTTTAGCGTCAGAAGTCTTGCGTGTCCACTGGTATGAAGCAGGTTAAAGATCTTGTAACCTCATGTCTCGGCTGGAATTGCAGAACATCGGAAATGACTGACAGATCGAGCAGTGACTCGAGGGCTGAATCACGTCTCTTGTCCCCGCCCACTGTGTGTAAATCCGCCAACAGGACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53638 True 356 lncRNA 0.48 1 12809034 12809389

Neighbor

gene id symbol gene type direction distance location
cep68 cep68 coding downstream 18590 12783357 ~ 12790444 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding downstream 40034 12762561 ~ 12769000 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding downstream 50879 12751340 ~ 12758155 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding downstream 76132 12724492 ~ 12732902 (-)
urb2 urb2,LOC107552917 coding downstream 112906 12686299 ~ 12696128 (-)
si:ch211-217g15.3 NA coding upstream 65825 12875214 ~ 12877240 (-)
znf511 znf511 coding upstream 103421 12912810 ~ 12917062 (-)
erlin1 erlin1,LOC108263345,LOC108426813,LOC107725471,LOC107666491,LOC107743516,LOC107601865,LOC107676597 coding upstream 136320 12945709 ~ 12956916 (-)
kat6b kat6b,LOC107743589 coding upstream 245026 13054415 ~ 13091908 (-)
adka adk,adka,LOC107601874,LOC108426804,LOC107666490,LOC107743514,LOC107655429 coding upstream 288405 13097794 ~ 13229541 (-)
G45340 NA non-coding downstream 32918 12774445 ~ 12776116 (-)
trnal-cag NA non-coding downstream 74752 12734200 ~ 12734282 (-)
G45323 NA non-coding downstream 84854 12721601 ~ 12724180 (-)
G45324 LOC108263641 non-coding downstream 87681 12719629 ~ 12721353 (-)
G45305 actc1,LOC105021204 non-coding downstream 91705 12714684 ~ 12717329 (-)
G45409 NA non-coding upstream 37118 12846507 ~ 12846713 (-)
G45415 NA non-coding upstream 49585 12858974 ~ 12862052 (-)
G45395 NA non-coding upstream 56719 12866108 ~ 12868456 (-)
G45422 NA non-coding upstream 96885 12906274 ~ 12906475 (-)
G45586 NA non-coding upstream 439553 13248942 ~ 13250377 (-)
trnak-cuu_1 NA other downstream 169432 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 169711 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 175616 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 274819 12524636 ~ 12534215 (-)
nin nin other downstream 343971 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 196097 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 620608 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1372502 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1970467 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2603524 15412913 ~ 15416483 (-)

Expression


Co-expression Network