G45323


Basic Information

Item Value
gene id G45323
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12721601 ~ 12724180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53553
atacatacataccatgttttataaatgtgatTGCTTTCTTTGGAAAGCATGCACTGTTCTTTAATTCCATTGTTTtgcttttactttatttttgcaCTTATATACAACATATATCAGAAGTTATGTTACTTTTAAAACCTGGAATGTCAAATTATAGTATATACTGAGTCACAGACCTATCTTCTATTCATATATAGtagtgaaaaatataaaaaatgaaatacattgaCAAGTCACTGTTACATAGTGTTACCTTACACAGCATACTTAAATGCTGTTGTCCTGTTTGAAAATGTTCATTTGACTAACTCATGCCAAGTGTTATTAAACATAGTATCACATTTATAATTGCTATGTATCTTCATTCAGcttcattcatacatttttgaaaaataccTGTTCAGTcctatatttaatttattcttaaCCCAGCTGTTACTGAGAACAAGGGGTGGGAAATGTTGTCTGTGGTTTCAACATTGTACACATACACTGCTGAAAGTGTTAACTGTTACTGGGAGCACCTGCTTCACAGGCCATACAAGatatctgcattattttgttGCTGCACTGtttaagaaaaaacacttttttgagGAGAGAGGAAATCATCATG
>TU53554
atacatacataccatgttttataaatgtgatTGCTTTCTTTGGAAAGCATGCACTGTTCTTTAATTCCATTGTTTtgcttttactttatttttgcaCTTATATACAACATATATCAGAAGTTATGTTACTTTTAAAACCTGGAATGTCAAATTATAGTATATACTGAGTCACAGACCTATCTTCTATTCATATATAGtagtgaaaaatataaaaaatgaaatacattgaCAAGTCACTGTTACATAGTGTTACCTTACACAGCATACTTAAATGCTGTTGTCCTGTTTGAAAATGTTCATTTGACTAACTCATGCCAAGTGTTATTAAACATAGTATCACATTTATAATTGCTATGTATCTTCATTCAGcttcattcatacatttttgaaaaataccTGTTCAGTcctatatttaatttattcttaaCCCAGCTGTTACTGAGAACAAGGGGTGGGAAATGTTGTCTGTGGTTTCAACATTGTACACATACACTGCTGAAAGTGTTAACTGTTACTGGGAGCACCTGCTTCACAGGCCATACAAGatatctgcattattttgttGCTGCACTGtttaagaaaaaacacttttttgagGAGAGAGGAAATCATCATGTAATAATCAATACCATtacatgttttgtgttgttttttttttttttaaatctaatacaACTATAAAATGAATAGGTTCAGATATGTTGCAATATTATAACAAGTATTGTGATGAAAGATATAATTATGATATGGTACAGCCTTACTTGGAAACATCAACTGGCTTACACTGGTAAACTCCTATCAAAcatattatgttaatattatattaaattattttaatataataattttccCCATGTGTATTTCCATGTTGTACAATAATTTTGGATGCCATATCTGTGAATAATAAAGGTAAtagaaaaatacataaacacaatgTGATAAAACTAGAAAAAGgtttattaatacatttgaGAAACACATCGTGGTGGCACTGAATTAAGCAACACTCACAACTATAACCTTTTCAAGTAATAATGATATGAACACTAAAGCTGAGAGTAAAATACTGAGTCCCCACAAGTCTGCAGTGAGTGACTCAAAATCCCATcgctgtcactgtccaaatacacTACTGCACGTTCACATACAGCCAAAACCACAAACCCTAAAGTCATATCTATGCACTCTTCAAACCAGATCGCTCAGCTTTTTACACAGACAATAACTGGTAGATCTTTGTTCTTCTGTGACTCAGAAGCAACATTATGGCTTCATTATAATCACTAACAATTCACCACTAAACAAATCACTATTACAATACAGAAAAATGACTTGCTTAGCATCCTTGAGAAATACTAATGTCATTTTAGTCTTCAAAAATCCTGGAATCAGTGGTGGCCCAATCCTCTATTACAAGATAAGTAGATTTTTAGGATGTCATAATGTTACAGTAACAAGGGCAACATAGTGGTGCACCATTGGGCACGATATTTCTTCCCTGAAAAAGATATTACACAGCAttttctgtagcatttctgtagcattatgtaatttatgttgAACAATACAGAATACATATTCACATTAAACCAGAGATATTTGTCCCACTTCAATTAAGCTACACTGTGTAGATAATGAGTACAACTTTTGTAAACTTTGAAAAGTGCTGGGGACATAATGACAGGTCAAAAAAAAGATAGTGGTTTCATTTAAACCGATGCTTTGGATGGATGCTTTGGAAGTCTTTTACAAAACCAGGCATATCAAAAGGTTGTAGGAACATGTCCTCAGTGAAAGTAAATCTATGCCATAAATCACACTATGGAATGGATTGAGTATAAACTTATCATCATAATTACATCTAATTTGCCAGTACATACTGGCAAATATAAACCATCAAAACTGACACATGTAattcctagaaaaaaaaagcctgagtCTAAAATTTAGCATCTTCAATACACTATTCATGATATGTTAATAATGCAAGTTAAAATTATTGAACGATGCTAAAACTAGCTTTCATTTTGTACAGTAGGCTTCTGTTGTGGATTACTGCGTCTGATAGTCCAGTTTTGAGGTTCTGCACCAAtgcaaataaaacatacaacatatattttaatgttggcAGACTCTGAGAGAATGCTCTGGTGGCTGACTGTggttttaaaatgcaatataaaatcTATTATTTTACTGGTCCCTGACATCTTTTAAAATTCTGATAACTAATACCAGTCAACACACGAGGCAAGAAATTGGGCAAGTAAGATCAAATAAATAGCACAGAcctaaaatatcattttgtcatttgatTTTTCATGATAATCCATTAAGGAAGACTGGCAAGCTGGATGCAGATCTCTACCTGTGACTGGAAGGAATGTTGCTGGCAGTCTCAGAGATTTACTGCGACCTAGCAGAGAAGCAGCGCATGTACTCAGTCATCCAAGGGTTATAATCAGGGACGAGCTTGCTTTTGTTCAACTTTTCCAAGTCAGCTGACTTTGCTCTTCGCTTGTCCATTCTCTTCATCTGTTTCTCAACCTCTCGTCTGGTCTTTGCTCGTAGTGCAGACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53553 False 616 lncRNA 0.32 1 12723565 12724180
TU53554 True 2580 lncRNA 0.34 1 12721601 12724180

Neighbor

gene id symbol gene type direction distance location
urb2 urb2,LOC107552917 coding downstream 25473 12686299 ~ 12696128 (-)
zgc:66472 LOC108263827 coding downstream 37852 12674753 ~ 12683749 (-)
trnae-cuc_9 NA coding downstream 52710 12668820 ~ 12668891 (-)
trnak-cuu_2 NA coding downstream 53036 12668493 ~ 12668565 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding downstream 58135 12644615 ~ 12663466 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding upstream 312 12724492 ~ 12732902 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding upstream 27160 12751340 ~ 12758155 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding upstream 38381 12762561 ~ 12769000 (-)
cep68 cep68 coding upstream 59177 12783357 ~ 12790444 (-)
slc1a4 slc1a4,LOC107725464 coding upstream 67400 12791580 ~ 12810514 (-)
G45324 LOC108263641 non-coding downstream 248 12719629 ~ 12721353 (-)
G45305 actc1,LOC105021204 non-coding downstream 4272 12714684 ~ 12717329 (-)
LOC117596890 NA non-coding downstream 92345 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 93213 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 94120 12627046 ~ 12627481 (-)
trnal-cag NA non-coding upstream 10020 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 50265 12774445 ~ 12776116 (-)
G45391 NA non-coding upstream 84854 12809034 ~ 12809389 (-)
G45409 NA non-coding upstream 122327 12846507 ~ 12846713 (-)
G45415 NA non-coding upstream 134794 12858974 ~ 12862052 (-)
trnak-cuu_1 NA other downstream 81999 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 82278 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 88183 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 187386 12524636 ~ 12534215 (-)
nin nin other downstream 256538 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 281306 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 705817 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1457711 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2055676 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2688733 15412913 ~ 15416483 (-)

Expression


Co-expression Network