G45324 (LOC108263641)


Basic Information

Item Value
gene id G45324
gene name LOC108263641
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12719629 ~ 12721353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53555
TTTGTTTGCTCACAGAAATACCATTATACAGCTGAGGAGCAGCTCACCTCCTTGGTTGATGCAGCTGGACCAACATTGTGCGTTCTTTTCGAGGCcatatctgcctgtctgtctcctgAGCCATACATAGCAAAAGGATGTCTGCTTTCTTTGTCAGTGTCTTTGGTGATGTGATGCTTGGCTTTAGTTCGGGTTGGCTTGGATGAATGCCTTGGTTTGCTTTTCATATTGGTCTGAACACGGGGATACCTTTCTGGTGGGATGACAGGGGCCACAGGGGAGAGTGCTGtgcctttctcttcctccttttcctgAGGTTTAACATCTTCTGTTACttgttctgttttaaaaaaaaaaaggtgattagTTGAGCCTTTGCCTTTTGGGGAGTAAAACCCAGCTAAACTATTGAAAAGCAGAGTTTTCTCCCATTGTTGTTCTGTAAGGTCCATACATTAGTTATATACCACTAGTAGCCTAAAAGTTCAGTGGGACGTACCTGCCTGATACTGCATACACGGCTGATATTGGCCTGAAAATGTGGATCAGTATCTGACATCTTTTCTAATTCCATCTATTAACACTTTTCATGCTGTTAATATGTTATGCTGCCTGATACCACAAATCACAGGATATAACTTATCATAAAGGACACCTCCATCACGATTCTGAGGTTTTACCACAGAAGCTTGCACAGAACCCTGCTATCACAAATGGGACAAATCTGTGCATCCTTAGTTAAGAATTCAGTATTCTAAATTTTCCTAATTGTCCAGTGAATTTATTGTTCATCTGAAATTATAGCTTTGCAGCCACATCACTCTTGCTTTAGCCTTATCATACTATTTACACTTAAGGCCTATTTACAGAGTACCTGTGTGGTTTCAGTGAAGCATCATGATCCTGAGGACACCATATCTCTAGGGTCTAGACATTACCCTACCTCTGATCTGGCTTGTATCCGGTTCTCTCGCCTCTTCTGCTCCATGCTCTTCGTGCACTGCTGTCTCTGCTGTTGGTGCCTCTTCCTCCTTCTGCAGCCCGTAGTCCTTAGTTCTCTCCTGAGGTGTACATTTGCCGCTGGACTCTGTGTCGCTTCCACATTCATCCCAAAACCACGGGTTGTGTGTTTGCTCCAGCAACCGCCTCGACAGTCTGTAGTTCACCAAATCCTCATAACACTTCGCGTACGTTTCCCATTTCGGATCCTTAAATTTCTTCATATATTCTGACCTAATCCGTTTGGTCACCATATTCCTGCTAAAGAGAAGGGGAGATTACTTTCGCCTAGGATACAGTGTAGCATATCACACAAAAGAGGacatttattcatgtttctGCATGACTCTCTAGACTGCGCCTGTGCAGCCTTCACGTGCTCCGCAAATTGTTGTATTTCCTACTTGCAAAGCTGCAATTACGATGTCTTCGCATTCAGTAGGCATACTGAcgtttgctagttagctagcctgGTGTATATGTGTATCTTTCTAACACTTTCTAGTTGCAAAGGATAAAGCAAGCcggtgtatatgtgtatattgcGCAAATGGTGATTGCCCAAAAAAAAGGCTAATAAAACCTACTAACCATCAACCATGGATGCGCCCGTTCCTCTTCTATGAGGAAAAAGTAAAGGTTTTGTTACAGAACTCGGTTCTCAAAAGCTACAAAGCTCTTAGAGAGGTTCGTGGACACCGGTTAGGTCAGAAACTCGTATTTACA

Function

NR:

description
PREDICTED: centriole, cilia and spindle-associated protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53555 True 1725 lncRNA 0.43 1 12719629 12721353

Neighbor

gene id symbol gene type direction distance location
urb2 urb2,LOC107552917 coding downstream 23501 12686299 ~ 12696128 (-)
zgc:66472 LOC108263827 coding downstream 35880 12674753 ~ 12683749 (-)
trnae-cuc_9 NA coding downstream 50738 12668820 ~ 12668891 (-)
trnak-cuu_2 NA coding downstream 51064 12668493 ~ 12668565 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding downstream 56163 12644615 ~ 12663466 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding upstream 3139 12724492 ~ 12732902 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding upstream 29987 12751340 ~ 12758155 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding upstream 41208 12762561 ~ 12769000 (-)
cep68 cep68 coding upstream 62004 12783357 ~ 12790444 (-)
slc1a4 slc1a4,LOC107725464 coding upstream 70227 12791580 ~ 12810514 (-)
G45305 actc1,LOC105021204 non-coding downstream 2300 12714684 ~ 12717329 (-)
LOC117596890 NA non-coding downstream 90373 12628472 ~ 12629256 (-)
LOC117596888 NA non-coding downstream 91241 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 92148 12627046 ~ 12627481 (-)
G45249 NA non-coding downstream 350280 12368513 ~ 12369349 (-)
G45323 NA non-coding upstream 248 12721601 ~ 12724180 (-)
trnal-cag NA non-coding upstream 12847 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 53092 12774445 ~ 12776116 (-)
G45391 NA non-coding upstream 87681 12809034 ~ 12809389 (-)
G45409 NA non-coding upstream 125154 12846507 ~ 12846713 (-)
trnak-cuu_1 NA other downstream 80027 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 80306 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 86211 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 185414 12524636 ~ 12534215 (-)
nin nin other downstream 254566 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 284133 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 708644 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1460538 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 2058503 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2691560 15412913 ~ 15416483 (-)

Expression


Co-expression Network