LOC117596890


Basic Information

Item Value
gene id LOC117596890
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12628472 ~ 12629256 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577880.1
AGAATTGAGATTACTGTGAACCATAAATGAATTGGGGGAACATGTTCCTGGATGCTCAGCGATGTTTCCTGTTGGACTGAGTTCAACTTATGGGATGGACTGGTATAAATGGCACCCTGGGACCTTCATTCAACAGATTACCCTGAACCTGCCAGAGAGATACGTCCTGAGACCTACAAATTGCtgcagtcatcatcatcatgaaagtttggattgtgtgtgtgctgctgtgtgctgcctTTACACTGAGGACCGCTGCAGCTGCAGCAATTGAGATTGAGCCTGAGCAGAATCAGAAACTTCCAGGTTAGTGACCATCAAGAGTGAACAGTTTGGGATATAATGAAACACTCTAATGAATATTTCTTAGATTGTGTTATTATCATCATGTTAATGACAAAGGCAGTTCCTGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577880.1 True 416 lncRNA 0.43 3 12628472 12629256

Neighbor

gene id symbol gene type direction distance location
LOC113537655 LOC108262224 coding downstream 75400 12545878 ~ 12553072 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding downstream 120876 12485749 ~ 12507596 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding downstream 142846 12472527 ~ 12485626 (-)
sav1 sav1,LOC106517965,LOC107602930 coding downstream 196828 12422281 ~ 12431644 (-)
map4k5 map4k5 coding downstream 226985 12358272 ~ 12401487 (-)
dtx4b LOC108263325,LOC108426833,LOC104952642 coding upstream 15359 12644615 ~ 12663466 (-)
trnak-cuu_2 NA coding upstream 39237 12668493 ~ 12668565 (-)
trnae-cuc_9 NA coding upstream 39564 12668820 ~ 12668891 (-)
zgc:66472 LOC108263827 coding upstream 45497 12674753 ~ 12683749 (-)
urb2 urb2,LOC107552917 coding upstream 57043 12686299 ~ 12696128 (-)
LOC117596888 NA non-coding downstream 84 12627677 ~ 12628388 (-)
LOC117596889 NA non-coding downstream 991 12627046 ~ 12627481 (-)
G45249 NA non-coding downstream 259123 12368513 ~ 12369349 (-)
G45236 NA non-coding downstream 324931 12290327 ~ 12303541 (-)
LOC117596852 NA non-coding downstream 386351 12241609 ~ 12242121 (-)
G45305 actc1,LOC105021204 non-coding upstream 85428 12714684 ~ 12717329 (-)
G45324 LOC108263641 non-coding upstream 90373 12719629 ~ 12721353 (-)
G45323 NA non-coding upstream 92345 12721601 ~ 12724180 (-)
trnal-cag NA non-coding upstream 104944 12734200 ~ 12734282 (-)
G45340 NA non-coding upstream 145189 12774445 ~ 12776116 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 94257 12524636 ~ 12534215 (-)
nin nin other downstream 163409 12435109 ~ 12465063 (-)
tmem254 tmem254 other downstream 475950 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 607004 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 919788 11708614 ~ 11708684 (-)
LOC113539135 NA other upstream 1957 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 9996 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 10274 12639530 ~ 12639602 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 376230 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 800741 13429997 ~ 13435486 (-)

Expression


Co-expression Network