G45236


Basic Information

Item Value
gene id G45236
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12290327 ~ 12303541 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53414
CTTGATTGTTCCAGTAGGAGTGGTTGTAGATTATTCATACTGTGATGTGCTtgaagtgtgtttgtggttcATTTATGCATGAATCGGGCGTGACTTTCACCTCATCGTTGCCTTTTTTGGTTTTGCATTATCTAACTATGCATGCAATTGTACACTAAGTATATTGAATTATGAgctgttttcagttttctgtgTTACTAACCAACAGCATTCATTAGTTTGTTGTTCTTAACATCGCCATGACAACCAATCAGCCAATGAGATCGGTTCTTCTGGATGTGGTGGATTGTACTCTCTTCGTGATGTCCTCGGCACCTTCTTGCATTTAAGGAAGCAAAGTAACAACAGCAGCTAGCTCCAAATAGATAGCTTACAGTTAGTTAGTCCTTATTTTACCTTTGCAAACAGGCACTGCAGTACTACAGCCAGCAGGGATGAGCGGGGACTCTGACAcaggcaaagaaagaaaaacagttacAGCCATCATTTAGTCATTTACTTGTCATCTAGTCATTTAGTCATCGGTCTGCTTAGACATGAAGCCCATGAAGTGTAACAACCTCCACGCCCAGACcagtttttatttgctttagaGTTACTGCAGCGTtggcaggctgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53414 True 654 lncRNA 0.42 2 12290327 12303541

Neighbor

gene id symbol gene type direction distance location
ptk7b LOC108263634,LOC108426849 coding downstream 475 12190217 ~ 12289852 (-)
srfb srf coding downstream 103714 12156217 ~ 12186613 (-)
LOC113542467 lrrc27 coding downstream 260183 12021991 ~ 12030144 (-)
LOC113540195 inpp5a coding downstream 316822 11817728 ~ 11973505 (-)
valopa LOC100305024,LOC108426856 coding downstream 503692 11772007 ~ 11786635 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 39694 12343235 ~ 12356768 (-)
map4k5 map4k5 coding upstream 54731 12358272 ~ 12401487 (-)
sav1 sav1,LOC106517965,LOC107602930 coding upstream 118740 12422281 ~ 12431644 (-)
pygl pygl,LOC107683467,LOC107736703,LOC107602977,LOC107553219 coding upstream 168986 12472527 ~ 12485626 (-)
trim9 trim9,LOC107553220,LOC107683494,LOC107654940 coding upstream 182208 12485749 ~ 12507596 (-)
LOC117596852 NA non-coding downstream 48206 12241609 ~ 12242121 (-)
G44848 NA non-coding downstream 282298 12007826 ~ 12008029 (-)
G44820 NA non-coding downstream 376298 11912210 ~ 11914029 (-)
G44818 NA non-coding downstream 450505 11839452 ~ 11839822 (-)
G44582 NA non-coding downstream 902381 11387206 ~ 11387946 (-)
G45249 NA non-coding upstream 64972 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 323505 12627046 ~ 12627481 (-)
LOC117596888 NA non-coding upstream 324136 12627677 ~ 12628388 (-)
LOC117596890 NA non-coding upstream 324931 12628472 ~ 12629256 (-)
G45305 actc1,LOC105021204 non-coding upstream 411143 12714684 ~ 12717329 (-)
tmem254 tmem254 other downstream 137805 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 268859 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 581643 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 2128804 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 2281766 9999959 ~ 10008561 (-)
nin nin other upstream 131568 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 221095 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 327672 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 335711 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 335989 12639530 ~ 12639602 (-)

Expression


Co-expression Network