c3h10orf53


Basic Information

Item Value
gene id c3h10orf53
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15412913 ~ 15416483 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55523
CTTACCCGCAGTCTAAGGAAAGCATATGAGAATGTGTCGTTgcctgaatcccaaatggctcagTTGGGTAGATCGTTCACGACCTAGGGTGTAGAAGCAATTATttcataccctatgtagtgcacttatatagGGAGCAGTGAAGACATTCAGGTTTCAGCCTTTCCCCTCTTAGCTAGTTTCTGAAGGCCGGTTGTGTCCGGTTTATGTAGTCTCGTGACAGCCTGTTGCTAGGGAAACCGCACCAGTGGCCACACAGCTAAGGCGCGCTGCTGTGAGTTCGTCAACACAGcacagtgtgttggtgtttttgaGGTTTCGGCTCAGAAAACTGAGATTATGCCCGATGTCTTCACTGGTCACTATTCGATATGGCCCTTACGAATCGTGTGGAGTTGTTCATCACAAGACATTCCGCCTAGAAGGCCTGCAAGcGGTTCTGAGAGACTGTGGCTACGTGTGTGTTCTTGAGGAAGCACCTGACTGGAACCAGGTGGAGCTGGTGGTTCATGGAGAAAGCGTCTATCAGTGCGACATCAACAAACTGGAGTTTGGAGGTGATGGGCGGCTTGATCCACTGTGCCAAGAGGCCCTAGAAGCAGTAAGGACTgcacaccaacaacaccaaatATGATACTGGAATACtgattaaaa
>XM_026942915.2
CCGGTTGTGTCCGGTTTATGTAGTCTCGTGACAGCCTGTTGCTAGGGAAACCGCACCAGTGGCCACACAGCTAAGGCGCGCTGCTGTGAGTTCGTCAACACAGcacagtgtgttggtgtttttgaGGTTTCGGCTCAGAAAACTGAGATTATGCCCGATGTCTTCACTGGTCACTATTCGATATGGCCCTTACGAATCGTGTGGAGTTGTTCATCACAAGACATTCCGCCTAGAAGGCCTGCAAGcGGTTCTGAGAGACTGTGGCTACGTGTGTGTTCTTGAGGAAGCACCTGACTGGAACCAGGTGGAGCTGGTGGTTCATGGAGAAAGCGTCTATCAGTGCGACATCAACAAACTGGAGTTTGGAGGTGATGGGCGGCTTGATCCACTGTGCCAAGAGGCCCTAGAAGCAGTAAGGACTgcacaccaacaacaccaaatATGATACTGGAATACtgattaaaaagacaaacaaatcagTTATTTGTAATAGTAATTTAATACCATTATTGCTCACAGCTCAGACAGAGACAGGCTTATATTGTCATGTCCCTGTTAACGAAGATATATGCAAGACATTTATCTACGAATGTGTGGTTTCTATCCTTTGATTGTTGAATCATGTATTATAAGCACACTAGCCCTACTTCATAGTAATTCATAGTCCCAAAAGGACAATCCTAATTTAGGAGCAACTAAGAATATCATGGCAGCCATAAAGGATATTGCTGCTTGTCACTATGCCATCTGTTTGGTGTCTCAGAATGAAGCCAGGTGTGGCACAAAGTGATGGGAGATGAGTGATCTCAGCACTGATGGACATAGGCATTCTAATATAATATTCTATTCatttctgtactttttcttgTATATGACTAAACATATCTATATTCATTTCTAAAACAGATGAGCACAGCAATCAAAACCTGAATGATACAGGATAACTCTATTACTAGGTACGCATTGTGCTTTGAAAGCGAGGCTTCCATGAGGCTAAAGCACCAATTCTAAGGAATATTTAGAGTAAGTAGGTCAGCATTAAAAGCTCTTGCCCACAAATGCATTGAGGTCAAATGCACTGGTCATGAACTTCTTCAGCTCTGCCAGGTGTGTGAATTTGCTTCCTGTGGCAGGAGCTGCAGCAGGGTCACGGCCAACGTACctgagagagggacagagaggaaaaatacttgagtaattgtgcTTTGTTACAATACTTAagtattatattgtcatatttatactttacttgagtactGTAcacttacttaattacatttcaaagaaaaaaaacccttacatTTTACtcctaacatttttatttagaccttcaaaatggtcattacaaaacacaaaggtctctttttctcttatcCAGCCAATGACTATATGCTGTATAATAATTGAATGgactcagtttagcatccaatcatttcagtatAGGTTACAACCGGCCAATcaggttgtaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55523 False 654 TUCP 0.49 3 15413941 15416483
XM_026942915.2 True 1493 mRNA 0.40 3 15412913 15416294

Neighbor

gene id symbol gene type direction distance location
LOC113544576 hps6 coding downstream 328584 15079023 ~ 15084329 (-)
pcgf6 pcgf6,LOC107716281 coding downstream 388085 15018483 ~ 15024828 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding downstream 403323 14997517 ~ 15009590 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding downstream 446112 14962949 ~ 14966801 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 597613 14812705 ~ 14815300 (-)
chata chat coding upstream 2259 15418742 ~ 15428240 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding upstream 12531 15429014 ~ 15431763 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding upstream 20052 15436535 ~ 15445515 (-)
LOC113544434 LOC108262902,LOC108442942 coding upstream 41028 15457511 ~ 15473941 (-)
hif1an hif1an,LOC107707391 coding upstream 264238 15680721 ~ 15696855 (-)
G46869 NA non-coding downstream 259217 15106917 ~ 15153696 (-)
G46754 NA non-coding downstream 346914 15064518 ~ 15065999 (-)
G46750 NA non-coding downstream 351740 15060856 ~ 15061173 (-)
G46711 NA non-coding downstream 400463 15012247 ~ 15012450 (-)
G46680 NA non-coding downstream 475604 14937096 ~ 14937309 (-)
LOC113538630 NA non-coding upstream 167682 15584165 ~ 15591191 (-)
G47114 LOC101463634 non-coding upstream 180246 15596729 ~ 15599206 (-)
LOC117596835 NA non-coding upstream 203122 15619605 ~ 15673458 (-)
G47130 NA non-coding upstream 280595 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 317350 15733833 ~ 15734079 (-)
sdhaf4 sdhaf4 other downstream 628160 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1220670 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1977427 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2381717 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2773311 12639530 ~ 12639602 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1028213 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1562648 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2054704 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2144921 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 2161695 17578178 ~ 17661419 (-)

Expression


Co-expression Network