pcgf6 (pcgf6,LOC107716281)


Basic Information

Item Value
gene id pcgf6
gene name pcgf6,LOC107716281
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15018483 ~ 15024828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945723.2
ACCATAAATAATTATGTGTGGCATTTCAacgttgttgtggttgttgtttaAGTTAAAAAGCATTTTTGTGTTGACTTTTATTGTGTGTAAACCCGCACGCGGCATCTCGGTGTTGTTATTGTCGCGCGCAAAGCTTGACTCGCGGGATTTAATGTTGTAGCAACCGGCTGTGAGGAGAAATGCTGttaaagttcatttatttactgtaacacGGTTTAAACGTCTCAGTTTCGCTGGAAAACAAGACCCAAAGCAGGATATGGTTATGTTCATCTGAAAAGAACagaatatttaagaaaaaatatatatatatttaaaaaataacgaCGAAGAATGGACGACAGCCGTGAGGGAAAGGAAAGTTTGGGCGAGGGCTCGTGCAGTGGCGCTGACGCTCAGGAGGAAGCTCCGGGGAGCAACATCACCTGTGCAGAGCATTCACTGCCACTGAGGGAGCTGTATCCTTATATTCGTTGTGGTCTCTGCAATGGCTTCTTCATCGATGCCACCACCATCACTGAATGCCTTCATACATTCTGTAAAAGTTGCATTGTCAAGCACTTCTTCTGCAGCAACAGGTGTCCCAACTGTAGCATCGTCGTTCATCAAACACAACCACTATACAATATAAGACCTGACAGGCAGTTACAAGATATTGTTTATAAGATGGTCCCATGTTTGGAGGACGTGGAGAGGGCACGAATGTGTGCGTTTTACAAAGAGAGAGGACTGCCAATCCCAAAACCAGCTCTAAGTATGCTTCCAGTAAAGCttctgaaacagaaacagagagaccacaTGCCACAGTCTGTTTTCACCATTCCTCCAGAGCTTGATGTGTCTCTAATGTTGGATTTTGTTGGAGCTGAGGAGGGCATTGAGAATTATAagCCTTTGGAGAGAAAGTATATCCGTGTCTCAGGTGAAGCTACTATTCGTCACGTGGAGCTCTTTATCAGAAGGAAAATGGAGTTGAGTCCAAATCTGAAGGTGGATGTTGTTTGTGGAGAGCATCTCTTAGAGCAGTGTCAGTCTTTAAGAGAAGTGCAAAGCACAATGGGAGAAAATGCCCTACAGGATGGAATGCTGGTTTTACAGTTTGGACTTGTGCTGCCTACTCAGTGAACAGAAGACTGTGAATTATCTAACCTTCTATCCACAGGGAACAACGTAAGGGCTATTCTGTACTttgtgagaaacaaaaaaaaatctttttcactTATTGCTTCCTGTTGAAAACATTTCTCATTTGGTTAAAAATTAATACTCTTCCATGTTCTCAATTTTTATGGATTCTTTAATGcagttttataatttatagaAATAGTAAACTTTATGGAAAAAACATGAGGTATACAGTATAAGAGACGCTGTAACGACAGTGAAAATGATCTGTGTCTTTTGTAATGATATACATCCAATGCATCTGTTTTCCAcccaataaatatatatatttgaatatttgtgCTTTTGGCCAAAAAGATTTGGATTAAAAGTGCAagagttttttt

Function

symbol description
pcgf6 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

NR:

description
polycomb group RING finger protein 6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11470 PCGF6, MBLR; polycomb group RING finger protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945723.2 True 1511 mRNA 0.40 10 15018483 15024828

Neighbor

gene id symbol gene type direction distance location
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding downstream 8893 14997517 ~ 15009590 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding downstream 51682 14962949 ~ 14966801 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 203183 14812705 ~ 14815300 (-)
tlx1 tlx1,LOC107588667,LOC107585374,LOC107694453 coding downstream 226915 14785440 ~ 14791568 (-)
smap1 smap1 coding downstream 239995 14673081 ~ 14778488 (-)
LOC113544576 hps6 coding upstream 54195 15079023 ~ 15084329 (-)
chata chat coding upstream 393914 15418742 ~ 15428240 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding upstream 404186 15429014 ~ 15431763 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding upstream 411707 15436535 ~ 15445515 (-)
LOC113544434 LOC108262902,LOC108442942 coding upstream 432683 15457511 ~ 15473941 (-)
G46711 NA non-coding downstream 6033 15012247 ~ 15012450 (-)
G46680 NA non-coding downstream 81174 14937096 ~ 14937309 (-)
G46576 NA non-coding downstream 392513 14617653 ~ 14625970 (-)
G46591 NA non-coding downstream 403719 14614516 ~ 14614764 (-)
G46590 NA non-coding downstream 404665 14613541 ~ 14613818 (-)
G46750 NA non-coding upstream 36028 15060856 ~ 15061173 (-)
G46754 NA non-coding upstream 39690 15064518 ~ 15065999 (-)
G46869 NA non-coding upstream 82089 15106917 ~ 15153696 (-)
LOC113538630 NA non-coding upstream 559337 15584165 ~ 15591191 (-)
G47114 LOC101463634 non-coding upstream 571901 15596729 ~ 15599206 (-)
sdhaf4 sdhaf4 other downstream 233730 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 826240 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1582997 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1987287 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2378881 12639530 ~ 12639602 (-)
c3h10orf53 NA other upstream 388085 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1419868 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1954303 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2446359 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2536576 17561404 ~ 17574422 (-)

Expression


Co-expression Network