RNA id: XM_026945723.2


Basic Information

Item Value
RNA id XM_026945723.2
length 1511
RNA type mRNA
GC content 0.40
exon number 10
gene id pcgf6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15018483 ~ 15024828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATAAATAATTATGTGTGGCATTTCAacgttgttgtggttgttgtttaAGTTAAAAAGCATTTTTGTGTTGACTTTTATTGTGTGTAAACCCGCACGCGGCATCTCGGTGTTGTTATTGTCGCGCGCAAAGCTTGACTCGCGGGATTTAATGTTGTAGCAACCGGCTGTGAGGAGAAATGCTGttaaagttcatttatttactgtaacacGGTTTAAACGTCTCAGTTTCGCTGGAAAACAAGACCCAAAGCAGGATATGGTTATGTTCATCTGAAAAGAACagaatatttaagaaaaaatatatatatatttaaaaaataacgaCGAAGAATGGACGACAGCCGTGAGGGAAAGGAAAGTTTGGGCGAGGGCTCGTGCAGTGGCGCTGACGCTCAGGAGGAAGCTCCGGGGAGCAACATCACCTGTGCAGAGCATTCACTGCCACTGAGGGAGCTGTATCCTTATATTCGTTGTGGTCTCTGCAATGGCTTCTTCATCGATGCCACCACCATCACTGAATGCCTTCATACATTCTGTAAAAGTTGCATTGTCAAGCACTTCTTCTGCAGCAACAGGTGTCCCAACTGTAGCATCGTCGTTCATCAAACACAACCACTATACAATATAAGACCTGACAGGCAGTTACAAGATATTGTTTATAAGATGGTCCCATGTTTGGAGGACGTGGAGAGGGCACGAATGTGTGCGTTTTACAAAGAGAGAGGACTGCCAATCCCAAAACCAGCTCTAAGTATGCTTCCAGTAAAGCttctgaaacagaaacagagagaccacaTGCCACAGTCTGTTTTCACCATTCCTCCAGAGCTTGATGTGTCTCTAATGTTGGATTTTGTTGGAGCTGAGGAGGGCATTGAGAATTATAagCCTTTGGAGAGAAAGTATATCCGTGTCTCAGGTGAAGCTACTATTCGTCACGTGGAGCTCTTTATCAGAAGGAAAATGGAGTTGAGTCCAAATCTGAAGGTGGATGTTGTTTGTGGAGAGCATCTCTTAGAGCAGTGTCAGTCTTTAAGAGAAGTGCAAAGCACAATGGGAGAAAATGCCCTACAGGATGGAATGCTGGTTTTACAGTTTGGACTTGTGCTGCCTACTCAGTGAACAGAAGACTGTGAATTATCTAACCTTCTATCCACAGGGAACAACGTAAGGGCTATTCTGTACTttgtgagaaacaaaaaaaaatctttttcactTATTGCTTCCTGTTGAAAACATTTCTCATTTGGTTAAAAATTAATACTCTTCCATGTTCTCAATTTTTATGGATTCTTTAATGcagttttataatttatagaAATAGTAAACTTTATGGAAAAAACATGAGGTATACAGTATAAGAGACGCTGTAACGACAGTGAAAATGATCTGTGTCTTTTGTAATGATATACATCCAATGCATCTGTTTTCCAcccaataaatatatatatttgaatatttgtgCTTTTGGCCAAAAAGATTTGGATTAAAAGTGCAagagttttttt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11470 PCGF6, MBLR; polycomb group RING finger protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55218 lncRNA downstream 6033 15012247 ~ 15012450 (-) True G46711
TU55183 lncRNA downstream 81174 14937096 ~ 14937309 (-) True G46680
TU55026 lncRNA downstream 392513 14617653 ~ 14625970 (-) True G46576
TU55042 lncRNA downstream 403719 14614516 ~ 14614764 (-) True G46591
TU55041 lncRNA downstream 404665 14613541 ~ 14613818 (-) True G46590
TU55261 lncRNA upstream 36028 15060856 ~ 15061173 (-) True G46750
TU55267 lncRNA upstream 39690 15064518 ~ 15065307 (-) False G46754
TU55265 lncRNA upstream 40206 15065034 ~ 15065999 (-) True G46754
TU55268 lncRNA upstream 40206 15065034 ~ 15065307 (-) False G46754
TU55417 lncRNA upstream 82089 15106917 ~ 15153696 (-) True G46869
XM_026944180.2 mRNA downstream 8893 14997517 ~ 15009590 (-) False nt5c2a
XM_026944160.2 mRNA downstream 8893 14997517 ~ 15009590 (-) True nt5c2a
XM_026944170.2 mRNA downstream 8894 14997517 ~ 15009589 (-) False nt5c2a
XM_034303163.1 mRNA downstream 8895 14997517 ~ 15009588 (-) False nt5c2a
XM_034302813.1 mRNA downstream 51682 14962949 ~ 14966801 (-) False LOC113542020
XM_026943448.2 mRNA upstream 54195 15079023 ~ 15084329 (-) True LOC113544576
XM_026942915.2 mRNA upstream 388085 15412913 ~ 15416294 (-) True c3h10orf53
XM_026942598.2 mRNA upstream 393914 15418742 ~ 15428240 (-) False chata
XM_026942590.2 mRNA upstream 393914 15418742 ~ 15428240 (-) True chata
XM_026942611.2 mRNA upstream 404186 15429014 ~ 15431763 (-) True slc18a3a
TU55100 other downstream 233749 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 826240 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1987287 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 2284201 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 2349592 12668820 ~ 12668891 (-) True trnae-cuc_9
TU55523 other upstream 389113 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 1954303 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 1954303 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 1954303 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 2446359 17471187 ~ 17476061 (-) True cisd1

Expression Profile