Gene
RNA
| Item | Value |
|---|---|
| RNA id | trnae-cuc_9 |
| length | 72 |
| RNA type | tRNA |
| GC content | 0.65 |
| exon number | 1 |
| gene id | trnae-cuc_9 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12668820 ~ 12668891 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577880.1 | lncRNA | downstream | 39564 | 12628472 ~ 12629256 (-) | True | LOC117596890 |
| XR_004577878.1 | lncRNA | downstream | 40432 | 12627677 ~ 12628388 (-) | True | LOC117596888 |
| XR_004577879.1 | lncRNA | downstream | 41339 | 12627046 ~ 12627481 (-) | True | LOC117596889 |
| TU53462 | lncRNA | downstream | 233337 | 12435274 ~ 12435483 (-) | False | nin |
| TU53441 | lncRNA | downstream | 299471 | 12368513 ~ 12369349 (-) | True | G45249 |
| TU53526 | lncRNA | upstream | 45793 | 12714684 ~ 12717329 (-) | True | G45305 |
| TU53555 | lncRNA | upstream | 50738 | 12719629 ~ 12721353 (-) | True | G45324 |
| TU53554 | lncRNA | upstream | 52710 | 12721601 ~ 12724180 (-) | True | G45323 |
| TU53553 | lncRNA | upstream | 54674 | 12723565 ~ 12724180 (-) | False | G45323 |
| TU53581 | lncRNA | upstream | 105554 | 12774445 ~ 12776116 (-) | True | G45340 |
| XM_034302874.1 | mRNA | downstream | 5354 | 12644615 ~ 12663466 (-) | True | dtx4b |
| XM_026934693.1 | mRNA | downstream | 35402 | 12631213 ~ 12633418 (-) | True | LOC113539135 |
| XM_034301503.1 | mRNA | downstream | 115926 | 12548237 ~ 12552894 (-) | False | LOC113537655 |
| XM_026945490.2 | mRNA | upstream | 5862 | 12674753 ~ 12683749 (-) | True | zgc:66472 |
| XM_034303011.1 | mRNA | upstream | 17408 | 12686299 ~ 12696128 (-) | True | urb2 |
| XM_026943181.2 | mRNA | upstream | 55601 | 12724492 ~ 12732902 (-) | True | rab4a |
| XM_026936811.2 | mRNA | upstream | 82449 | 12751340 ~ 12758155 (-) | True | rhoua |
| XM_026936781.2 | mRNA | upstream | 93670 | 12762561 ~ 12769000 (-) | False | tbp |
| trnak-cuu_2 | other | downstream | 255 | 12668493 ~ 12668565 (-) | True | trnak-cuu_2 |
| trnak-cuu_1 | other | downstream | 29218 | 12639530 ~ 12639602 (-) | True | trnak-cuu_1 |
| trnae-cuc_8 | other | downstream | 29497 | 12639252 ~ 12639323 (-) | True | trnae-cuc_8 |
| TU53537 | other | downstream | 35805 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
| TU53492 | other | downstream | 134745 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| trnal-cag | other | upstream | 65309 | 12734200 ~ 12734282 (-) | True | trnal-cag |
| XR_004577863.1 | other | upstream | 336595 | 13005486 ~ 13031196 (-) | False | slka |
| XR_004577668.1 | other | upstream | 1513000 | 14181891 ~ 14192243 (-) | True | ccdc85a |
| TU55100 | other | upstream | 2110974 | 14779865 ~ 14784734 (-) | False | sdhaf4 |
| TU55523 | other | upstream | 2745050 | 15413941 ~ 15416483 (-) | False | c3h10orf53 |
