RNA id: XM_026936811.2


Basic Information

Item Value
RNA id XM_026936811.2
length 3614
RNA type mRNA
GC content 0.40
exon number 3
gene id rhoua
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12751340 ~ 12758155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTCATCCTGTTGGAGTAACGCGATGGGGCTGGATCACATGGTCCAGGAGAGGAGGAGTGGACCCTCACCATCCTCACTCCAAAACTGAGTCCAAGTTTGTGTCTGTGCCCTACGCACTTTGCTCGCTTTTAGGCGTGCCTAAAATTAATTGGACTAATTTTTTGCATATGGATATTACTTTAGCGTTCACGGACACGGCAGAGATATCTCATCACAGACTAGGTCCAAGCATGAACGCATATGGACTGGAGAAATCAGGGTTAGCCTAACAGTGTTGGGCTCTGTGTGTGCAGCGATGCCTCCGCAGGGTGTAGGGGAGTATAAACCCGTGTCAGGCTCGTCAGTGCCGCCGGTACCACCGCGCAGATTCAGGAGTAAAGATGTGGCCAAAAGGAGCCGCTGGGGCTCGGCGCCGGAGCGCAGGGTGAAGTGTGTGCTGGTTGGAGACGGAGCTGTTGGTAAAACAAGTCTGATCATCAGTTACACCACCAACGGCTACCCCACGGAGTATGTCCCAACGGCTTTTGATAACTTTTCAGCGGTGGTCGCAGTTGATGGCAAGCCTGTGAAACTCCAGCTGTGTGACACTGCGGGCCAGGATGAGTTTGATAAGCTGCGACCTCTGTGCTACACCAACGCTGACGTCTTCCTGTTGTGCTTCAGTGTAGTCACACCATCCTCGTTCCAGAATGTCAGAGAGAAATGGGTGCCTGAGATCCGACGGCACTGTCCACGCACCCCTATCCTGCTAGTGGGGACCCAAGGTGACCTCCGGCAGGACGTCAACATTCTCATCCAGCTGGCCAAGTACAAAGAGCGTCCAGTGGAGCCACAagaggcctgtgtgtgtgctgaggagGTGCATGCTGTGTCTTATATGGAGTGCTCAGCACTTACCCAGAAGAACCTGAAAGAGGTGTTCGATGCAGCAATTCTAGCCAGCATTCAGAACATAGACAGCCAGCAGCAAAGGTTGATGAAACGCACACCCAATAAGATGAGGACGCTCTCCAAGTCCTGGTGGAGGAAATACTGCTGTTTGGCGTAGAAGGACAAGAGGGATATTCACTCTTGGAGGTTTTAAGTATGGACTGTAAGACAAAACCGAAGGCTTTAGGGGTTGCTGTAGTAATTTATGAACAGAGATTAAAATTATATTGAAATGTGATGGGACATAGTGCAGACGAGCAGGATAAGTGAAATGAAAAGATTCTACAGACATTAACAACACTTATCCATCCTTTGCAGTGGAAAATGCAAAGTTGACTCTTCAAATGAGTTGCTCGTGTCTAGTTTCACGTTCCTGCTCCAGCcagtgtttttgctttgtcttgAATAACAGAGAGCAAGGAGAAACAACCATGCAATATAGCATTGCAAAAGAGAGCCACATGCAATATAGCATTGAATACCTTTTATTGCTGTTGAATGAACTCATAAAATCATCACTGCAGGTGCAGTTAATTCAACATTGGTGTTTTATTATGCAGCAGATCctctctaacactaacactaaatTTAGACTACTCAGCCTACACTGTGAAATAACAAAGACCACTTGGGTGGTCCCAGATAGAGGACAATAGTCCACCAATATTTATGCGCTGTCCTTCTTTTACAACACAATTTGTTtctaaattttaattaaactacCTGGACGAACAGCTTTCCTCAAGCTGGAATATCACGATTTCCTGTTGGCTAGCCACAAAGACCTGCTTCAGTCAAGAGTTACTAAAGTGTAAGTGTATTCTAGTGCACTATCAGTAGTTTGGCATCGGTTTGTTTTTAGCGATCTGTGAGGTTGAAGGACAGCCCAGTTCCAAAAcagctgaatgaaaaaaagtctAGTTTACTTTATGACTTAATCCATTCAAAACATGAGGTCATGGTCAGTAAGTGAGTATTAAAGAGgcaagttaatatttttgtatgtacTGCATGTTCTCTCATGCCAGAAGTGCTTGAATTGGAAAAACGATGTTTGCTTTCTATGTCACTAGACATTGGCTGTTTATCTGTCATGAAGATAAGGTGTACAATAGGGGTTAGTGTTTAATACAGGAGTTTCCCTTGAAATTACAGATCGATATCTCACAGAGCTGAAGTTTCAGACAGCCTTGATAATGCTGATAAATTTGAAtgtattgctttaaaaaatcattatagttatatccagtgtgttttatttacaatttctgtatttttatgtcCATTTCCATAAAAAAATACCAGTTCTTCATAAATTCCATACAGCAATCTAGCAACCATGAAACTATGAAAGCTGGATATTAAAGTGTATAAGTAGCCTGAaattatatgatatatacagaaaaatgtgataaagcatGTAGAGAATGTccaaaatttatttctgtatagctCAGGTAAAGCTGTATCATACAGGTTTTGTTTAATCTAGAACAAGTGACCCTAGCAGATTATATTACTTACCTGCTATTACACTTTGAATGTTATATCACAAAAGAAGTTATGGTTTAtttcaatcatttttattttctttctttctttctttttttttttttttacaaagaaatcAAAATCATATTAATAGCCAATAACATTGGCGATTAcggttattaataataacagtgcCATTGTTTATTAGGAATCTGTCTCCATGACTTGTATCTGAATTTTATACGCATGACAATGTCTATGAAAAGACATCAGTATAACTTTGTGCCTGGTCTCCTGTTGAGACACCTCAATCTGATGTCATGATAAACACTACAGATATGAAGCACAAGCATCATTTATTGCTCAACATTTCCCCAGTTGTTGTAAACCCTGGAGCTTTATCCTCGGTAAATAATTGATTAGGTCCACCCACataggatgaactggaaaagTCACCTGCTGAAACGGGACATGAGCAAGTGAAAATGGAGTGGCACTGAATAGAGAGGTTAAAGTTTCACAAGATAAGCAGCGGTAGACACCGGAGTACCAGTAAGCCTGCCCTTCCCAACATGCTTATATCAGCAATGAACTGAAACTGATGTCTCTTTGAAAGTTGCCTTCATatactaaaaaacaaaaatagctcCTCATGTCTACCATCCATAAGAGTGTAAGTGAATGTGGAGAGATGGAGTCTTTGGTTTCTGAATGTGAAAAACTGAATACTGTAACTGTACATGTGAAAGAGAAAGCTCAATGAACACACATACAACTGGAAATAAAGGTGCTGTTAAAAGATTTTTGAACACAATAGTTGGTACATTGCAGTCAACATGTTTCAAATGTAATTGTGAAGTTACATAATGTATGAATTGTGTTTGACACTGGCATTTTGCTAATCTTTGAATTGAATCAAACTGAATGTTGGTAAAAGGATGAATGTCAGTGTTGAATGCTACAGTACAATTAGCTTTTGTTGGGTACATTTCTTTATTGTCAAATTGCTTGCAACACTGTGAACTGTGTATTTTTGGGGGTAATGAGCTTGTTGCAAGATGATGTAAGATTTACAGTAGATGAAGATATTCTCAGAACCTGGTCACAATCTGGCGGGACATGAGATGAGATAATAGCACAGGAATGTATACAGATTGTtatcctttttaaaataaagatgcaAAATATC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07865 RHOU, WRCH1; Ras homolog gene family, member U

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53554 lncRNA downstream 27160 12721601 ~ 12724180 (-) True G45323
TU53553 lncRNA downstream 27160 12723565 ~ 12724180 (-) False G45323
TU53555 lncRNA downstream 29987 12719629 ~ 12721353 (-) True G45324
TU53526 lncRNA downstream 34011 12714684 ~ 12717329 (-) True G45305
XR_004577880.1 lncRNA downstream 122084 12628472 ~ 12629256 (-) True LOC117596890
TU53581 lncRNA upstream 16290 12774445 ~ 12776116 (-) True G45340
TU53638 lncRNA upstream 50879 12809034 ~ 12809389 (-) True G45391
TU53656 lncRNA upstream 88352 12846507 ~ 12846713 (-) True G45409
TU53662 lncRNA upstream 100819 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA upstream 100890 12859045 ~ 12862052 (-) False G45415
XM_026943181.2 mRNA downstream 18438 12724492 ~ 12732902 (-) True rab4a
XM_034303011.1 mRNA downstream 55212 12686299 ~ 12696128 (-) True urb2
XM_026945490.2 mRNA downstream 67591 12674753 ~ 12683749 (-) True zgc:66472
XM_034302874.1 mRNA downstream 87874 12644615 ~ 12663466 (-) True dtx4b
XM_026934693.1 mRNA downstream 117922 12631213 ~ 12633418 (-) True LOC113539135
XM_026936781.2 mRNA upstream 4406 12762561 ~ 12769000 (-) False tbp
XM_026936789.2 mRNA upstream 4406 12762561 ~ 12768936 (-) True tbp
XM_034302927.1 mRNA upstream 4406 12762561 ~ 12768911 (-) False tbp
XM_026936799.2 mRNA upstream 4406 12762561 ~ 12768755 (-) False tbp
XM_026944763.2 mRNA upstream 25202 12783357 ~ 12790442 (-) True cep68
trnal-cag other downstream 17058 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 82449 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 82775 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 111738 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 112017 12639252 ~ 12639323 (-) True trnae-cuc_8
XR_004577863.1 other upstream 247331 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1423736 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 2021710 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2655786 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 4220976 16979131 ~ 16982729 (-) False morn4

Expression Profile