RNA id: XM_026936789.2


Basic Information

Item Value
RNA id XM_026936789.2
length 2042
RNA type mRNA
GC content 0.42
exon number 9
gene id tbp
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12762561 ~ 12769000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGCGGAACTGGTTGTAAAGGCTCATGTTTTTTGCGCCTAGTCTGAGACAAGcggACAGGTTTTCTCGTTTCGGCCGTGGTCAACGATAACGTTTCTCCATGAACACCGACGTCAGGGTCTATCACTGAATGCTGTTGGACATCTAAACTCCTGCCTGTGCTGATATCATTCGTCTGCTGTTGGCTTCATAACTGGACAACATGGAGCAGAACAACAGCTTGCCTCCATTCCCACAAAGCCTTGCATCGCCTCAGGGGGCCATGACGCCTGGTATCCATATCTTTAGCCCTATGATGCCATATGGTACAGGGCTTACGCCACAGCCAGTACAGAACACCAACAGCCTATCACTCTTAGAGGAGCAACAGaggcagcagcaacaacagcagcagcagcaggcagcTTCTCAACAGCAGGGTGGGATAGTGGGAACATCAGGCCAAACTCCTCAGCTTTATCACTCACAAGCAGTTTCCACCACCACAGCACTGCCAGGAAACACCCCTCTCTACACAACCCCCCTAACACCCATGACCCCCATCACTCCTGCCACACCTGCTTCAGAAAGCTCTGGCATTGTCCCTCAGCTACAaaatattgtgTCAACTGTGAACTTGGGATGCAAACTTGACCTGAAGACAATAGCACTGCGAGCCAGGAATGCTGAGTATAATCCTAAGCGTTTTGCGGCTGTCATCATGAGAATACGAGAACCCAGAACAACTGCTCTGATTTTCAGTTCAGGCAAGATGGTCTGCACGGGAGCTAAGAGCGAGGAGCAGTCTCGCCTGGCCGCCAGGAAATACGCAAGAGTAGTGCAGAAACTCGGTTTCCCTGCCAAATTTCTAGACTTCAAGATTCAGAACATGGTCGGAAGTTGTGATGTCAAGTTCCCGATCCGACTGGAGGGCCTGGTTCTCACCCATCAGCAGTTCAGCAGTTATGAGCCAGAGTTATTCCCTGGTTTAatctacagaatgattaaaccCAGAATTGTGCTTTTAATATTCGTTTCAGGCAAAGTTGTACTCACAGGTGCAAAGGTGAGGGGTGAAATCTATGAAgcatttgaaaatatatatccTATCTTAAAAGGATTCAGAAAGACAACATAATCCTGTTGACCTGCACCTTTCTTATTGTACTTGTTTGAGGGAACTGAGTTTACTAGGACATCTTTTCTCttacttttgtttaattaaGTGTAAATactaatgtgttttattcacgGATAGTGAATggaaataacttttatttttttttattcagctgGTTTGTGGCTATCATAGTCTGCAGTTTTACCAGAATCTTTTAATGGTTTTACCAtctgtaaaaaatgttttgttttgttttgttttgtttttttaaacattattcaCATTCCTTCTGCGAGCAGGCAGGTTCTTTTTAGGATAATTTCTGAGAAGTGCAGGACTGTCAAGATACAAGAAAAGTGTTGAAAATATTTATCAGGAtttaaagtgttaaatattacagaGTTAATAATGTGTCTCAAGCAGTTAAAGTTCATTTGCCCCCAGtggaagctgtgtgtgtggtaagATGCACAGATCGGTTGAAAATTGTTGAAGTTTCTGATTTGGTGGGCCTGGCTTATTTTGTTAAAGCAGCTGTGCAGTATGTTAAGAACTACTTTTGTAATTTCATTGTGAATTATTCACTGAAATGTTGCAAGTCTTCCACCTAACCCTTGTAAtgaatataatatctgttcacaTCCATGTTAGTGTTGGCTCTCCAAATACATGGTGCATATTGATAACCAATAGTTTTGCTGATAGCCAAGTGCACTTTCCTTCTGCACAAATCCCTGTAAACATTTGTCTGTTCATGAAAGTTTTTTTGGAATGGCTGAGAGCCTGGACTGTGATTTGATTGATGTCGCTAgatatatattcattatatgGGTTATATTCAGCTTCTTGTCAAGCACTgataatgtaaatttttttttttttttttttttgcatcagttAGTGATTTGCTTTGAAACGAGCAAATAAATTTCTTATCCGTT

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53554 lncRNA downstream 38381 12721601 ~ 12724180 (-) True G45323
TU53553 lncRNA downstream 38381 12723565 ~ 12724180 (-) False G45323
TU53555 lncRNA downstream 41208 12719629 ~ 12721353 (-) True G45324
TU53526 lncRNA downstream 45232 12714684 ~ 12717329 (-) True G45305
XR_004577880.1 lncRNA downstream 133305 12628472 ~ 12629256 (-) True LOC117596890
TU53581 lncRNA upstream 5509 12774445 ~ 12776116 (-) True G45340
TU53638 lncRNA upstream 40098 12809034 ~ 12809389 (-) True G45391
TU53656 lncRNA upstream 77571 12846507 ~ 12846713 (-) True G45409
TU53662 lncRNA upstream 90038 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA upstream 90109 12859045 ~ 12862052 (-) False G45415
XM_026936811.2 mRNA downstream 4406 12751340 ~ 12758155 (-) True rhoua
XM_026943181.2 mRNA downstream 29659 12724492 ~ 12732902 (-) True rab4a
XM_034303011.1 mRNA downstream 66433 12686299 ~ 12696128 (-) True urb2
XM_026945490.2 mRNA downstream 78812 12674753 ~ 12683749 (-) True zgc:66472
XM_034302874.1 mRNA downstream 99095 12644615 ~ 12663466 (-) True dtx4b
XM_026944763.2 mRNA upstream 14421 12783357 ~ 12790442 (-) True cep68
XM_026944772.2 mRNA upstream 17062 12785998 ~ 12790444 (-) False cep68
XM_026945631.2 mRNA upstream 22644 12791580 ~ 12810514 (-) False slc1a4
XM_026945623.2 mRNA upstream 22644 12791580 ~ 12803379 (-) True slc1a4
XM_026944730.2 mRNA upstream 106278 12875214 ~ 12877240 (-) True si:ch211-217g15.3
trnal-cag other downstream 28279 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 93670 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 93996 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 122959 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 123238 12639252 ~ 12639323 (-) True trnae-cuc_8
XR_004577863.1 other upstream 236550 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1412955 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 2010929 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2645005 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 4210195 16979131 ~ 16982729 (-) False morn4

Expression Profile