si:ch211-217g15.3


Basic Information

Item Value
gene id si:ch211-217g15.3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12875214 ~ 12877240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944730.2
TACACATAGTCATAAATGAATCATGTGGCAGTCCATTTCTTTAATCATTGTGCTACTAAGACATCAGGAGCAACAATGTTCAGGTATTATGTTCTACTCTGCTTGTCAGTGATGCTGCACAGCACCACAGCAAGCCCATATAAATTATGGGGAAAGGAAGAGCATACAGCAGTTCAAAATACAAGGTCTCATGATTTTAATGAGAAGATCGTGCTGGGACTTAAGGAAGTTGAACCTGTAGAGGAGCTGGATCTGACAGAGGTTGATATTGATCCCCACATGGCCATATGGAAAGCTATGAAGCAGATTCAGCAGCAGAAATACAATAAGCCTGAAGAAGACAAAGACAAGCCCTACCTTCCATCTGACGTTCAGCACTCAGCTGGAAACAAGCATGTTGAAGCCTACCTTGAACCTCAATACCACAGTCAGGGTCAGCGCTATCAAGAAGCTGAGAAGGACCTGGATGACCTTTACCATGACATACAGGGAATAGTGAACCATGCTGACCTTAAAGAGCAAGTGGTCCAGCCTGAGATACCAGTGCCTGACAAGGCTGAAGTGATGGAACCACATGAAACAAGTGTGCATATGACCCCAGAGGAAGACAAAGATGGCCTGTATCAtggagattttatttttcatggaGGCCACCAAGTGTTCCAGGTCCCAGTCATGGAAGATCTTCCCAAGACTGTTTATACAGAACCTGAAGAGGACCTAGATCACCTCTTCCATAAACAAGAATAATGCACTTAAAATGATGAAATCATGTCCAGAATGTGTTAAATTGCATGAATTTATTAAATTCATAATAgcatgatgaaaataaaaagccaTGTAAGTATCATTCTAACCAtctgcaaatagcaaataaagcTCTGATATTGATCAGAA

Function

NR:

description
uncharacterized protein LOC109889721

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944730.2 True 897 mRNA 0.41 5 12875214 12877240

Neighbor

gene id symbol gene type direction distance location
slc1a4 slc1a4,LOC107725464 coding downstream 64700 12791580 ~ 12810514 (-)
cep68 cep68 coding downstream 84770 12783357 ~ 12790444 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding downstream 106214 12762561 ~ 12769000 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding downstream 117059 12751340 ~ 12758155 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC106610715 coding downstream 142312 12724492 ~ 12732902 (-)
znf511 znf511 coding upstream 35570 12912810 ~ 12917062 (-)
erlin1 erlin1,LOC108263345,LOC108426813,LOC107725471,LOC107666491,LOC107743516,LOC107601865,LOC107676597 coding upstream 68469 12945709 ~ 12956916 (-)
kat6b kat6b,LOC107743589 coding upstream 177175 13054415 ~ 13091908 (-)
adka adk,adka,LOC107601874,LOC108426804,LOC107666490,LOC107743514,LOC107655429 coding upstream 220554 13097794 ~ 13229541 (-)
vcla vcl,LOC108426801,LOC107666493,LOC107726962,LOC107655431 coding upstream 359976 13237216 ~ 13279778 (-)
G45395 NA non-coding downstream 6758 12866108 ~ 12868456 (-)
G45415 NA non-coding downstream 13162 12858974 ~ 12862052 (-)
G45409 NA non-coding downstream 28501 12846507 ~ 12846713 (-)
G45391 NA non-coding downstream 65825 12809034 ~ 12809389 (-)
G45340 NA non-coding downstream 99098 12774445 ~ 12776116 (-)
G45422 NA non-coding upstream 29034 12906274 ~ 12906475 (-)
G45586 NA non-coding upstream 371702 13248942 ~ 13250377 (-)
G45616 NA non-coding upstream 430854 13308094 ~ 13310240 (-)
G45622 NA non-coding upstream 435710 13312950 ~ 13313156 (-)
G45755 NA non-coding upstream 587256 13464496 ~ 13464739 (-)
trnak-cuu_1 NA other downstream 235612 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 235891 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 241796 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 340999 12524636 ~ 12534215 (-)
nin nin other downstream 410151 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 128246 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 552757 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1304651 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1902616 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2535673 15412913 ~ 15416483 (-)

Expression


Co-expression Network