G45422


Basic Information

Item Value
gene id G45422
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12906274 ~ 12906475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU53680
ATCATAaccaaatccttttttttaactgtatctTTTAAGAAATGTTTCTGGAATAAGAACTGTAATTAaacatttgctcattttaaatataataccTTACGTGAAAAGGTGCAAATCATACATCACATACATCACACTATATTTAGCATGTAGACCAAAATAGTCAAACTAACAGCTATATTTTAATTGTGTTCAAACTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53680 True 202 lncRNA 0.27 1 12906274 12906475

Neighbor

gene id symbol gene type direction distance location
si:ch211-217g15.3 NA coding downstream 29034 12875214 ~ 12877240 (-)
slc1a4 slc1a4,LOC107725464 coding downstream 95760 12791580 ~ 12810514 (-)
cep68 cep68 coding downstream 115830 12783357 ~ 12790444 (-)
tbp tbp,LOC107601858,LOC107666436,LOC107725488,LOC107676577 coding downstream 137274 12762561 ~ 12769000 (-)
rhoua rhou,LOC108263572,LOC107666438,LOC107601857,LOC108426825,LOC107725498,LOC107676561,LOC107743528 coding downstream 148119 12751340 ~ 12758155 (-)
znf511 znf511 coding upstream 6335 12912810 ~ 12917062 (-)
erlin1 erlin1,LOC108263345,LOC108426813,LOC107725471,LOC107666491,LOC107743516,LOC107601865,LOC107676597 coding upstream 39234 12945709 ~ 12956916 (-)
kat6b kat6b,LOC107743589 coding upstream 147940 13054415 ~ 13091908 (-)
adka adk,adka,LOC107601874,LOC108426804,LOC107666490,LOC107743514,LOC107655429 coding upstream 191319 13097794 ~ 13229541 (-)
vcla vcl,LOC108426801,LOC107666493,LOC107726962,LOC107655431 coding upstream 330741 13237216 ~ 13279778 (-)
G45395 NA non-coding downstream 37818 12866108 ~ 12868456 (-)
G45415 NA non-coding downstream 44222 12858974 ~ 12862052 (-)
G45409 NA non-coding downstream 59561 12846507 ~ 12846713 (-)
G45391 NA non-coding downstream 96885 12809034 ~ 12809389 (-)
G45340 NA non-coding downstream 130158 12774445 ~ 12776116 (-)
G45586 NA non-coding upstream 342467 13248942 ~ 13250377 (-)
G45616 NA non-coding upstream 401619 13308094 ~ 13310240 (-)
G45622 NA non-coding upstream 406475 13312950 ~ 13313156 (-)
G45755 NA non-coding upstream 558021 13464496 ~ 13464739 (-)
LOC113543535 NA non-coding upstream 726280 13632755 ~ 13641524 (-)
trnak-cuu_1 NA other downstream 266672 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 266951 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 272856 12631213 ~ 12633418 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other downstream 372059 12524636 ~ 12534215 (-)
nin nin other downstream 441211 12435109 ~ 12465063 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other upstream 99011 13005486 ~ 13031196 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other upstream 523522 13429997 ~ 13435486 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 1275416 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1873381 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 2506438 15412913 ~ 15416483 (-)

Expression


Co-expression Network