LOC113543535


Basic Information

Item Value
gene id LOC113543535
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13632755 ~ 13641524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404420.2
CAATCATATGCTCACTTTTCACACAGGAGGCAAAGCAAATAAACCACACTGGGCTAGATTGCTTCTCTCCCTAAAACCGACTCTTTGAGAGGCTGTTGTGTAAGCATGTGtggttctttgtgtgtgttctcatgTTCATGCGTGTgtgagaaagggaaaaaaacagacaacaagTGGTTGTGCGTGGCCtatgtgcatgtatgtacatgcatttgtgagtgtgtgtcttctAACATTTAATTTCGAGTGTAGAAGAGCAGTAAAGCAGGTATGTGAGGAGGCAGGGTGTGGTCCAGGCCAGTCAAGCAGGTCAAGCATGTGACCAGTGCCAGAGGTGGAGGGTGTGGAGGGAACCAGAGATTCTGGGAAAAGCGTGAGAGAGATAAGCAGAGCAGGGGCCAAACGGCTCCGAGCCAGCGTCAGGTACAAAGTATGCCTGGGGGAGACGACCAGAGGGTTCCGGAATGTTGACCACACTGACCCGAGCCATTTAGCATGATAAGTAATGGACACCTGTGCCCACCCCCAGCATTCCTCACAAGGCTGGGAGCACCAAAAGATACAATCACTGGCTCCAAACACAGCTTACCAGAGCAGGAGTACAGAGGGGAAGCGCTACTCAGCATGATGGATATCCCTCACCTGTCAGACGGCGATCTCTGGCTGGACAGTGCTTGCCTGACCTTGGCTATGTCATGCCTCTTACGcccatgtgcacacacaccacagacaacACTGAAGAAAATATACTGGAATGTAGTCAGGTGAGAAGACAGAGAAGCACACTACAGAAGAACCCAACATCAGCTTGCATTACTGCATACAGAATGGCAGCAGAAGAGGAGAGTCTAAAAAAAGAACCGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404420.2 True 865 lncRNA 0.49 4 13632755 13641524

Neighbor

gene id symbol gene type direction distance location
papolg papolg coding downstream 60945 13556873 ~ 13571810 (-)
rel rel coding downstream 78206 13545526 ~ 13554549 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding downstream 95888 13531660 ~ 13536867 (-)
sgpl1 sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334 coding downstream 115658 13502714 ~ 13517097 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding downstream 134794 13465041 ~ 13497961 (-)
LOC117596880 NA coding upstream 210969 13852493 ~ 14033717 (-)
vrk2 vrk2 coding upstream 414618 14056142 ~ 14068978 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 726663 14368187 ~ 14387373 (-)
kcnq5a kcnq5,LOC107718835 coding upstream 747463 14388987 ~ 14514886 (-)
LOC113537600 rims1 coding upstream 879414 14520938 ~ 14595086 (-)
G45755 NA non-coding downstream 168016 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 319599 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 322515 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 382378 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 726280 12906274 ~ 12906475 (-)
G46183 NA non-coding upstream 542244 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 648032 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 972017 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 972992 14614516 ~ 14614764 (-)
G46576 NA non-coding upstream 976129 14617653 ~ 14625970 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 197269 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 601559 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 993153 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 993432 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 999337 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 540367 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1138332 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1771389 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2803172 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 3337607 16979131 ~ 16982729 (-)

Expression


Co-expression Network