sgpl1 (sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334)


Basic Information

Item Value
gene id sgpl1
gene name sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13502714 ~ 13517097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935679.2
TGCAGATGGTCGAGACACTACACTGATCTCTGGCTCATGTTCTAGCGTGAGCTTGCGCTCCTGAGGAAATCCTGTGGATTATAGATCTGTGCAAAGCGGATCCGCGAACCGGTGTGCACTTCCGGAGGTCGAGCCCGTGATTGTTGTGTAGCTCAATCGCCCGTCGCTCTTTCTACAACGCAAACAAAAGACCTCACCAGTTGACTTTTCGCTAATACTGCATAGGCGTCTCTTCTCTCTCGAGCTGCCCTTGAGGAGCAACATGGACTACACTAGTGCTTTGGAGGTGTATAAGGAGATGCTTCTGCTGTACTGTGAGGAGTTTAAGCACTACGTTAACTCAATGTGTGCTGGTTTGGAGCCATGGCAGATTATTGCATCAACATTGGTGTCTACCCTTGCTGCAATGTGGCTCAAaggcttcctgtttcagaaggagAGTCTGCTGTCTAGAACCAAGAAGCAGTGCTTTCGACTCATCAGAAAAATCCCATTTGTCGGCGCATCTATTCAGAACCAGCTGAACAAGGCACTTGATGACATGTCAATGAGCCTGTGCACGCTGAAGGAAGGAATGAGCTACACAAAGTGCCTGCCAGCACAGGGCCTCACACAGAAACAAGTCCTAGACAGCATCAGAGAGTACCAGACACTGAatGAAGTGAAGTGGTCCAAAGGCAAGGTTTCAGGGACAGTCTACTGGGGAGATGAAAAGCTCACAGATCTTCTGGTGAAGGTGTATGGTGAGTTTGCTTGGAGTAATCCCCTCCACCCAGACATCTTCCCTGGAGTGCGAAAGATGGAGGCAGAGGTGGTGCGGATGACATGTTCTCTCTTCAGTGGTGGGCCTGAGTCATGTGGCACAGTCACCTCTGGTGGAACTGAGAGCATTTTGATGGCCTGTAAGGCATACAGAGACCTGGCTTATGAGAGAGGAATCAAATATCCAGAGAtAATTGCACCAGTAAGCGCCCATGCAGCATTTGACAAGGCAGCACACTACTTTGGAATGAAACTGATTCATATACCTTTGGATAAGAAGACCATGAAAGTCGATGTGAAGGCCATGAAGAGAGCCATCTCTAAGAACACAGCCATGCTGGTGTGCTCTGCTCCTCagttccctcatgggatcataGACCCCATTGTGGAAGTAGGGAAGTTGGCAGAAAAGTACAACATTCCCTTCCATGTGGATGCCTGCCTGGGTGGGTTCCTTATAGTGTTCATGGAAAAGGCCGGGTTCAAGCTGGAGCCATTTGACTTCCGAGTTAAAAGCGTTACAAGCATTTCAGCAGACACACATAAGTATGGCTATGCACCCAAAGGCTCCTCAGTGGTGGTCTACAGAGACAAGAAATATCGCCACTACCAGTACTTTGTAGCCCCTGATTGGCAGGGAGGAATTTACGCATCTCCCTCAATAGCTGGTTCTCGGCCTGGTGGTATCATCGCTGCCTGTTGGGCCACCATGATGCATATGGGAGAGAGTGGCTACGTGGAGGCCACCAAGAAGGTTGTTCAAACAGCCCGCATCATTGCAGCGGGCATCCGTAAAGTGGAGGgactgtttgtgtttggaaaCCCAGAAGTCTCCGTGGTGGCCTTAGGCTCCAACGTATTCGATATCTTCCGTTTATCCAATGCACTCACATCAAAGGGCTGGAATCTCAACACTCTTCAGTTCCCGTCTAGCATCCATATTTGTGTAACTATGCTGCACACACAGCCTGGTGTTGCAGAGCAATTCATCAAAGATGTGAGGGAGGAAGTAgcaaaaatcatgaaaaatccAAAGGAGAAGACCACTGGAATGGGAGCAATCTATGGCATGGCCCAGTCCATCCCTGATCGGTCAATGGTGACTGAGGTATCACGCGGCTTCCTGGACTGCCTCTACAGCACCGATGTTAAAAAGGTCCAAAAAAACCACTACGCCAGCAAGAAGAACCACATGAATGGGAATTCTAAAACTCACTGAGTCTGGCGTGACTGCTGGGGTCTGTGCCTGCAGCTGCCCATGGGCTGCTCATCACATTTACatacagacttttttttgtccGTCATTTCAATCACTCATTTACTTATTTCTAGTTAACGCACAAGCCATATAACCCCATTCACTTTGGGCATTTCCTTCAAGGTGATGATTCACTGTAGATAAATCTGTCCATTAAGTCTGTGGTATCAATGTCAGTGCAGAAGGTTCAGGGACTGTTAGTTTTTTCAAAAAAAGCGTGTTTATATCATCAATTTCTGTTATATGGGTCTATTGACACTTCTCCTCATGTATTTCACATTCCTCTGGCCATACTGTTGGAGGTTAATACTCCAGCTGAGCTCTCAGGTTATCACTGATTGAATCACTCATTGAGATTTAAGTACAATTACCCAATTCAGTAAAAACTCCCAAACCTTTTAATTGCAAACTAAACAGAACTGTAATATTTTCAGAGTACAGTTGTCACAGATAGTAGCCTCATGCAAGCAGAGCAGTAAGTTTTAAGTTAAGAAGCTTTTAATTTGGAGTCCGTTCTTTGTGCTGGTGCTGATCCCAATCAGATAACTGTGCAACTTTATTAATGTTACCGAGTAACATGAAGATGGACGGAGcaatattttagtttttcttttaataaatatttccaacaaatattttccaatttatttccaataaatatttatcatgTAATGAAACTTGAAGTACTACTCAGGTGTACCTGAATAACAAAAAATCTTTTTGGTTTTTGATAATATTagaatttataataatttctaatttaataggttgtttaaaaaattgtacATTACAACTGAAAACAAAttagatgatttaaaaaaatcatgtcttaATTCTAAAATCTCCTGAATATGATTTACTGGTAGTTCTGAGATGGATCCTCCCCCACATTATGTCTACCTCAGAATTTGTTCCAACTGTTATACATTTAATCCTTAATGAACTTTTCTTCTTTATAATCACAATTATTGGAATAAATATTCACATCCCACATATTACTTTATTCAATCTACTGGCCACTTAATACAATGAGAAATTGTTTGAACTCCTTGGGAAATGGTTGGGATGGggatatattttttaagatatgtgtaataaacaattatattgtTAAAGTTTGTGAACTGTAAAAAGGGAAAGGAGCTTTTGGATCAGTAGTGAGATGACAATGACACGGTACCACTGAATCATGACTGCAGACCTCATTGGCTATTTAATTCTGTATGTATTCATAATGTTTGTGACCactatgtgtgtttttacattatGCATCACTAATATAGGGTCTCATATttcaataaatgtaataattatttttaa

Function

symbol description
sgpl1 Predicted to enable sphinganine-1-phosphate aldolase activity. Predicted to be involved in sphingolipid catabolic process. Predicted to act upstream of or within carboxylic acid metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including heart; intestine; kidney; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Orthologous to human SGPL1 (sphingosine-1-phosphate lyase 1).

NR:

description
sphingosine-1-phosphate lyase 1-like isoform X1

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935679.2 True 3340 mRNA 0.42 14 13502714 13517097

Neighbor

gene id symbol gene type direction distance location
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding downstream 4753 13465041 ~ 13497961 (-)
ret ret coding downstream 43137 13437136 ~ 13459577 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding downstream 85043 13405268 ~ 13417671 (-)
tial1 tial1 coding downstream 127856 13366125 ~ 13374858 (-)
itprip LOC108263646 coding downstream 179025 13318232 ~ 13323689 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding upstream 14563 13531660 ~ 13536867 (-)
rel rel coding upstream 28429 13545526 ~ 13554549 (-)
papolg papolg coding upstream 39776 13556873 ~ 13571810 (-)
LOC117596880 NA coding upstream 335396 13852493 ~ 14033717 (-)
vrk2 vrk2 coding upstream 539045 14056142 ~ 14068978 (-)
G45755 NA non-coding downstream 37975 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 189558 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 192474 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 252337 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 596239 12906274 ~ 12906475 (-)
LOC113543535 NA non-coding upstream 115658 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 666671 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 772459 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 1096444 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 1097419 14614516 ~ 14614764 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 67228 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 471518 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 863112 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 863391 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 869296 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 664794 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1262759 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1895816 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2927599 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 3462034 16979131 ~ 16982729 (-)

Expression


Co-expression Network