RNA id: XM_026944772.2


Basic Information

Item Value
RNA id XM_026944772.2
length 2069
RNA type mRNA
GC content 0.47
exon number 4
gene id cep68
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12783357 ~ 12790444 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTTTCTATTGGCTGGCTGCCGCGAGCTCTTCCGCTTTTTCCGCCTGCCTTTAATAGGAACCGTTTTACTAGCGGACTGGACTGTATTTACACTGCTGAACGCTTCACTACTGGCTGTATGCGTGTGAATTTCATATACACTGAGCTTTTTAAACTCCTTCTGCGCTTcatctggggaaaaaagTTCTTCTGTCCTACTGAGAACAAATGGGGCATACAAGGGTTTTGGTGTGTTCCTATGGCTCTGGGAATTAACTGAACTTGATCGGGCAGCTTGTCTCCGATGGAGCAGAGGAACTATGGGAGGCGTAAAAGCAGGATCCCAGCGTTTATTCGCAGTGGCTACACGAGACACTTCACACAGGAAGCCGGGGACAGATCAGGGTCACTGCATGGCCAGGACGCTAAGGACTTCGACAGAGAGAGTGGTGCTAGCAAAAAAACTGTTACCATGGCACCTACTTCTAGGTACATGACCAGCAGGAGCTTGTATACTGCCCGAAAGCCACTGATCTCAACAGAGCACCAGATTTCAATCCTGAAGAATCCTCTCACACATGAATACTCAGAAAGGGTTCACATGAGCAGTGTGGGAAATTGTCAAAAACAAGATGAAGGGACAGATTCTAACATACTGGATAGCACAAGTGTTCCCCAGATCATTGATTATTCTCTTTCAGCACCCAGAGAAGATCTTTGTACTTCCTTGAATTTGTCAGAGCTCAGGCTGTGTTCTTCTCATGAGGAACCGAATTTCAGCCCCGTTCCTTCAGCAAGCAAAGTTGAAAGTAGGAGCCTTTCTAGTTCCCCTTTAGATGATTTGAGCCTTACAGTACCATTAAGCCCTAAGTGGACTTCCACCCAGCGGATTTTTCCTCATTCATACACTTCCCAAACTCGTACTTCCCAAAGGGCAAACACAAGCGCATCCAAGCAGGAGAGACATTCTCTTCTTAACACTGGCTTCTCACTGAGTAACAATAAGAGCTACTTGTCTGAGCCTAAACGAATGTCCCACTATCAAACCACTTACTGGGCCTGTGCTATCCCCAGTACTTTACCACCCTCTCCAGACCGCAAGTCTCCCAGCTGGGACCCTGACAAGGAGTATCAGACCCTCCTGGATTATACATACCCTCTAAGGCCCAACATAACCAACACCTGGAGTTCAAATGAACACAGGTTGCGCACTGATCAACCTTTACAAGACTCTGGCATTGAAGTGGACAGTTTTCTCAGCTcttctagtctttcttttttggaCCAGCCTGTTTCTGGAATGAGGCAGGGTAGATCTGGTCCAGCTTCTAGTCAAACATTTGGATTTCAAAATCCGAATCTGAGGAAACTGGCACATTCCAAGTCCTCGGACATCAGGGTGTCTAGAAGCCTTAATTCCTCAATGGAGCAGGTGGGTTTATCATTGGAAAGTCTGGATTGTGAGGGGAAAGACAGCTTTCACTATAAGAAATTTGGCATCTTTTCCACATCCAGGTCTGCTCCAAGCTTTATCAGGTCCACAAGCATCTTACCCCGTCTGGGGTCACTTGGCGAGTTTGATGAGGAGTTTCTCCGTTTGCCTGAACAGCTACAGGAGATTCAGGACCTTTCTCAGAAACTAAAGGACATCACAGCACAGATAAGTCAGCCAGTCACCACCAATTGGGAGTctctgcagagagagagtgcCTCTGTTAGGTCTTCATCAGTACAAGTGGAGAAACAGGCAGCTGATGTCTCTTATGTGCAAGGGCCTGCTGAAGAAGTTCCTCTCACAGAGCAGATGAAGGGAGTGAATACTAGAGCGCAGGTAATCAGCCATCAGGTAACCAGAGATAACCTGATGGATGTGGAAGCCATTGTGGATCAGCTGAgtggaatgtctttgtatgagtTTGAGAagacagagactgatgaggGGACAGAAGAAACCCAGGAGTCCCTCTTGCAACACTTACAAAAAAACTGATTCAGTGGTTGCACAAGGTAGTGGAGAAGATGGATGTCCTTTCCCCTCCTTCAGTGGACATTGAGAGTGTTAAAACCTCTCTGGCTGACTATAAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53581 lncRNA downstream 9882 12774445 ~ 12776116 (-) True G45340
TU53554 lncRNA downstream 61818 12721601 ~ 12724180 (-) True G45323
TU53553 lncRNA downstream 61818 12723565 ~ 12724180 (-) False G45323
TU53555 lncRNA downstream 64645 12719629 ~ 12721353 (-) True G45324
TU53526 lncRNA downstream 68669 12714684 ~ 12717329 (-) True G45305
TU53638 lncRNA upstream 18590 12809034 ~ 12809389 (-) True G45391
TU53656 lncRNA upstream 56063 12846507 ~ 12846713 (-) True G45409
TU53662 lncRNA upstream 68530 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA upstream 68601 12859045 ~ 12862052 (-) False G45415
TU53642 lncRNA upstream 75664 12866108 ~ 12868456 (-) True G45395
XM_026936781.2 mRNA downstream 16998 12762561 ~ 12769000 (-) False tbp
XM_026936789.2 mRNA downstream 17062 12762561 ~ 12768936 (-) True tbp
XM_034302927.1 mRNA downstream 17087 12762561 ~ 12768911 (-) False tbp
XM_026936799.2 mRNA downstream 17243 12762561 ~ 12768755 (-) False tbp
XM_026936811.2 mRNA downstream 27843 12751340 ~ 12758155 (-) True rhoua
XM_026945631.2 mRNA upstream 1136 12791580 ~ 12810514 (-) False slc1a4
XM_026945623.2 mRNA upstream 1136 12791580 ~ 12803379 (-) True slc1a4
XM_026944730.2 mRNA upstream 84770 12875214 ~ 12877240 (-) True si:ch211-217g15.3
XM_026941562.2 mRNA upstream 122366 12912810 ~ 12917062 (-) True znf511
XM_034302751.1 mRNA upstream 155265 12945709 ~ 12956916 (-) True erlin1
trnal-cag other downstream 51716 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 117107 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 117433 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 146396 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 146675 12639252 ~ 12639323 (-) True trnae-cuc_8
XR_004577863.1 other upstream 215042 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1391447 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1989421 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2623497 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 4188687 16979131 ~ 16982729 (-) False morn4

Expression Profile