RNA id: TU53555


Basic Information

Item Value
RNA id TU53555
length 1725
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G45324
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12719629 ~ 12721353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGTTTGCTCACAGAAATACCATTATACAGCTGAGGAGCAGCTCACCTCCTTGGTTGATGCAGCTGGACCAACATTGTGCGTTCTTTTCGAGGCcatatctgcctgtctgtctcctgAGCCATACATAGCAAAAGGATGTCTGCTTTCTTTGTCAGTGTCTTTGGTGATGTGATGCTTGGCTTTAGTTCGGGTTGGCTTGGATGAATGCCTTGGTTTGCTTTTCATATTGGTCTGAACACGGGGATACCTTTCTGGTGGGATGACAGGGGCCACAGGGGAGAGTGCTGtgcctttctcttcctccttttcctgAGGTTTAACATCTTCTGTTACttgttctgttttaaaaaaaaaaaggtgattagTTGAGCCTTTGCCTTTTGGGGAGTAAAACCCAGCTAAACTATTGAAAAGCAGAGTTTTCTCCCATTGTTGTTCTGTAAGGTCCATACATTAGTTATATACCACTAGTAGCCTAAAAGTTCAGTGGGACGTACCTGCCTGATACTGCATACACGGCTGATATTGGCCTGAAAATGTGGATCAGTATCTGACATCTTTTCTAATTCCATCTATTAACACTTTTCATGCTGTTAATATGTTATGCTGCCTGATACCACAAATCACAGGATATAACTTATCATAAAGGACACCTCCATCACGATTCTGAGGTTTTACCACAGAAGCTTGCACAGAACCCTGCTATCACAAATGGGACAAATCTGTGCATCCTTAGTTAAGAATTCAGTATTCTAAATTTTCCTAATTGTCCAGTGAATTTATTGTTCATCTGAAATTATAGCTTTGCAGCCACATCACTCTTGCTTTAGCCTTATCATACTATTTACACTTAAGGCCTATTTACAGAGTACCTGTGTGGTTTCAGTGAAGCATCATGATCCTGAGGACACCATATCTCTAGGGTCTAGACATTACCCTACCTCTGATCTGGCTTGTATCCGGTTCTCTCGCCTCTTCTGCTCCATGCTCTTCGTGCACTGCTGTCTCTGCTGTTGGTGCCTCTTCCTCCTTCTGCAGCCCGTAGTCCTTAGTTCTCTCCTGAGGTGTACATTTGCCGCTGGACTCTGTGTCGCTTCCACATTCATCCCAAAACCACGGGTTGTGTGTTTGCTCCAGCAACCGCCTCGACAGTCTGTAGTTCACCAAATCCTCATAACACTTCGCGTACGTTTCCCATTTCGGATCCTTAAATTTCTTCATATATTCTGACCTAATCCGTTTGGTCACCATATTCCTGCTAAAGAGAAGGGGAGATTACTTTCGCCTAGGATACAGTGTAGCATATCACACAAAAGAGGacatttattcatgtttctGCATGACTCTCTAGACTGCGCCTGTGCAGCCTTCACGTGCTCCGCAAATTGTTGTATTTCCTACTTGCAAAGCTGCAATTACGATGTCTTCGCATTCAGTAGGCATACTGAcgtttgctagttagctagcctgGTGTATATGTGTATCTTTCTAACACTTTCTAGTTGCAAAGGATAAAGCAAGCcggtgtatatgtgtatattgcGCAAATGGTGATTGCCCAAAAAAAAGGCTAATAAAACCTACTAACCATCAACCATGGATGCGCCCGTTCCTCTTCTATGAGGAAAAAGTAAAGGTTTTGTTACAGAACTCGGTTCTCAAAAGCTACAAAGCTCTTAGAGAGGTTCGTGGACACCGGTTAGGTCAGAAACTCGTATTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53526 lncRNA downstream 2300 12714684 ~ 12717329 (-) True G45305
XR_004577880.1 lncRNA downstream 90373 12628472 ~ 12629256 (-) True LOC117596890
XR_004577878.1 lncRNA downstream 91241 12627677 ~ 12628388 (-) True LOC117596888
XR_004577879.1 lncRNA downstream 92148 12627046 ~ 12627481 (-) True LOC117596889
TU53462 lncRNA downstream 284146 12435274 ~ 12435483 (-) False nin
TU53554 lncRNA upstream 248 12721601 ~ 12724180 (-) True G45323
TU53553 lncRNA upstream 2212 12723565 ~ 12724180 (-) False G45323
TU53581 lncRNA upstream 53092 12774445 ~ 12776116 (-) True G45340
TU53638 lncRNA upstream 87681 12809034 ~ 12809389 (-) True G45391
TU53656 lncRNA upstream 125154 12846507 ~ 12846713 (-) True G45409
XM_034303011.1 mRNA downstream 23501 12686299 ~ 12696128 (-) True urb2
XM_026945490.2 mRNA downstream 35880 12674753 ~ 12683749 (-) True zgc:66472
XM_034302874.1 mRNA downstream 56163 12644615 ~ 12663466 (-) True dtx4b
XM_026934693.1 mRNA downstream 86211 12631213 ~ 12633418 (-) True LOC113539135
XM_026932269.2 mRNA downstream 167222 12548237 ~ 12552407 (-) True LOC113537655
XM_026943181.2 mRNA upstream 3139 12724492 ~ 12732902 (-) True rab4a
XM_026936811.2 mRNA upstream 29987 12751340 ~ 12758155 (-) True rhoua
XM_026936781.2 mRNA upstream 41208 12762561 ~ 12769000 (-) False tbp
XM_026936789.2 mRNA upstream 41208 12762561 ~ 12768936 (-) True tbp
XM_034302927.1 mRNA upstream 41208 12762561 ~ 12768911 (-) False tbp
trnae-cuc_9 other downstream 50738 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 51064 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 80027 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 80306 12639252 ~ 12639323 (-) True trnae-cuc_8
TU53537 other downstream 86614 12631813 ~ 12633015 (-) False LOC113539135
trnal-cag other upstream 12847 12734200 ~ 12734282 (-) True trnal-cag
XR_004577863.1 other upstream 284133 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1460538 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 2058512 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2692588 15413941 ~ 15416483 (-) False c3h10orf53

Expression Profile