LOC113542020 (cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661)


Basic Information

Item Value
gene id LOC113542020
gene name cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14962949 ~ 14966801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939270.2
gttttgggtttttctgttgtttttgtttttgtggttttgctGTTTGCTGTTGTGTTCTTCTGTTTGccgttgcttttttttattgcttttgcaTATTTGGTTTGTTAAAGTGTTTTGCACGTTTTGCACTATTGCCATTCTTTTGAGTTTAAACTGACATTGACTGTTAAAGATAGCTGAGGTGAAAATATTCAGAGTTCAAGGAGGTGACATTGAAGAAGGCCTATAAAATACACTTGTAAGCTTTCTCACAGCCTGTGGAGTGCCAGTGTACTTCTTGATGTAGGACTGATTGAACTTACTGAATACCCAAGGATGGCTTGGCTTATTTGTTTCTGTGTATTTGCTGCAGTAATCATAGTGGCCTTTTATCTGAGGAAAATCCATGCCTTTCTGATAGATGATAGAGCTCCTCCAAACCTTCCTTCTCTCCCAATTATCGGGAGTCTTCTGAGCCTAAGGAGCGACAGCCCTCCGCATATTTTCTTTCAGCAGCTGCAGAAGAAATATGGAGGTATTTATTCGCTTATGATGGGCTCTCATAAAGTTATCATCATCAACAATCATCTCCATGCAAAAGAGGTCCTGCTTAAGAAAGGGAAAATATTTGCAGGAAGACCACGCACTGTTACTACAGACATTTTAACACGAGATGGGAAAGACATAGCATTTGCTGACTATAGTCCCACATGGAAGTTTCATCGAAAAATTGTACATGGGGCTCTGTGCATGTTTGGAGAGGGAACTGCATCTATCGAGAAAATAATTTGCCGAGAGGCGAGTTCTATGTGTGAAATCCTGACCAGCTTGCAGAGCTCTGCAGTAGACTTGGCGCCGGAGCTGACCCGTGCTGTCACAAACGTAGTATGTACCCTCTGTTTTAGCTCCTCATATAAACGTGGAGATCCTGAGTTTGAAGCTATGCTCCAGTACAGCCAGGGAATTGTGGATACAGTTGCCAAGGATAGTTTGGTGGATATCTTTCCGTGGCTCCAGTTCTTTCCAAATGAAGACCTCAGAATTCTAAAGTGTTGTGTCTCCATTAGAGACAAACTGCTTCAAAAGAAATATGATGAACACAAGGCAGACTTTAGCGATAACATCCAGCGAGACCTGTTGGATGCTCTACTGCGTGCCAAACACAGCTCGGAGAATAACAACACAAGCACTCATGTTGTCGGGCTTACTGATGATCATCTACTCATGACTGTAGGGGATATTTTTGGCGCTGGGGTGGAGACTACAACCACTGTGCTGAAGTGGTCCATTCTTTATCTTATACATCATCCACAGGTTCAGAGAAAGATTCAGGAGGAGTTGGACACTAAGATTGGGAGGGATCGGCACCCCCAGGCTAATGACAGAAGAAATCTGCCCTACCTGGAGGCCACCATCAGAGAAGTGCTCCGAATCCGGCCAGTCTCACCACTTCTCATCCCTCACGTAGCTCTCTCAGACGCTAATATAGGAGAGTACAGTGTACAGAAAGGGACACGAGTCATCGTTAACCTGTGGTCTTTGCACCACGATGAAAAAGAGTGGAAAAACCCAGAACTATTTAATCCAGAGCGGTTCCTGGATGAGGAAGGCAACAGTCTGTGCTGCCCATCACTCAGTTATCTACCATTTGGTGctggtgtgcgtgtgtgtctcggTGAGGCTCTGGCCAAGTTGGagctcttcctcttcctgtcaTGGATTCTGCAAAGGTTCACTCTGGAGGTACCCGCTGGTCAGCCCCTGCCCGAGCTGCAGGGCAAATTCGGAGTTGTTCTTCAACCCCAGAAATATAAAGTCATTGCCAGGCTCAGGCCAGGCTGGGAAAATAAGCCACAGAGCCAAGAGTCTGAGTCAGGCTAAGATGTAAATTGTTCTTTTTATACTGTTGACTATTTTCAGAGATttgctagtaaaaaaaaaaaaaaaattagaacaaaagagttttgtttttacatattgTCTTAACCCTTGTGTTCAGTTTGCAACTTAGCAATGGATATACTGTTAATGGGTTGACTTTAGACTTTGGGCAGCTGAGATAGTAAATAATTTTGGAAATGGCCAGTCTTGAATACATCTGTTTTTGGGgaacagtaaaaacacacaaacccactTCTCATGCCTGGAGTCGCTCCTACTAGCAGGTGTATGTAACCAGGTATGAGTGTAAATAAGACATGAAGGTAATGTAATAATAAGTGAATTAaccaatttgttttatttttgtaaaaagcaGTTGGTATTGATATATAGATTGATATTTCActagttttatgttttattcttgGGCCAAACTGACCAGAAAATAACCGGTGtaatatatgcaatataatCCTTTTTGATGTTCAGTAGAGAAAAATGAGCTAATCAGCTATAGATCACAAGCCAATATCATGTTGTGGcttttgatttcattatttacacaatatgaacaacagttttcattttttccccaaaggcTTCAGAGGTGTTGTCATGTTTGTCATATTTGTCTGAATTTAGAGAATATAACCATGAGTAAACAGTTATCACAAAACAATTTCAtggtgtttaaaggtgttttatttgtaatgtaCATTGACTCATTCATTTGATTGAGGCTTTATACAAAATGTTACCCATAGCagaaaatgcagttttataaaAAGGCAATTACAGATACAAAACTAAAATATAGTACCAGGTCTTGTGTCAGAGCTAAACTTAAAGAGCAATTGGCTTCTAAAGCCTTCGTCACCTTCGAGCAAACAAACTCACtgcattaatttaaaacagTGCAATGACAACTTattgaggcaaaaaaaaaaaaaaaaaaatcatactgcAATGATCAACTAATTTTGATTTCctctttttaaacaatatgtATTTTTGGTCTCaagatatgaaatgaaaaaatgaagagGACACATGAGTACATAACCCTTAAGcaccaacaataa
>XM_034302813.1
gttttgggtttttctgttgtttttgtttttgtggttttgctGTTTGCTGTTGTGTTCTTCTGTTTGccgttgcttttttttattgcttttgcaTATTTGGTTTGTTAAAGTGTTTTGCACGTTTTGCACTATTGCCATTCTTTTGAGTTTAAACTGACATTGACTGTTAAAGATAGCTGAGGTGAAAATATTCAGAGTTCAAGGAGGTGACATTGAAGAAGGCCTATAAAATACACTTATGATAGAGCTCCTCCAAACCTTCCTTCTCTCCCAATTATCGGGAGTCTTCTGAGCCTAAGGAGCGACAGCCCTCCGCATATTTTCTTTCAGCAGCTGCAGAAGAAATATGGAGGTATTTATTCGCTTATGATGGGCTCTCATAAAGTTATCATCATCAACAATCATCTCCATGCAAAAGAGGTCCTGCTTAAGAAAGGGAAAATATTTGCAGGAAGACCACGCACTGTTACTACAGACATTTTAACACGAGATGGGAAAGACATAGCATTTGCTGACTATAGTCCCACATGGAAGTTTCATCGAAAAATTGTACATGGGGCTCTGTGCATGTTTGGAGAGGGAACTGCATCTATCGAGAAAATAATTTGCCGAGAGGCGAGTTCTATGTGTGAAATCCTGACCAGCTTGCAGAGCTCTGCAGTAGACTTGGCGCCGGAGCTGACCCGTGCTGTCACAAACGTAGTATGTACCCTCTGTTTTAGCTCCTCATATAAACGTGGAGATCCTGAGTTTGAAGCTATGCTCCAGTACAGCCAGGGAATTGTGGATACAGTTGCCAAGGATAGTTTGGTGGATATCTTTCCGTGGCTCCAGTTCTTTCCAAATGAAGACCTCAGAATTCTAAAGTGTTGTGTCTCCATTAGAGACAAACTGCTTCAAAAGAAATATGATGAACACAAGGCAGACTTTAGCGATAACATCCAGCGAGACCTGTTGGATGCTCTACTGCGTGCCAAACACAGCTCGGAGAATAACAACACAAGCACTCATGTTGTCGGGCTTACTGATGATCATCTACTCATGACTGTAGGGGATATTTTTGGCGCTGGGGTGGAGACTACAACCACTGTGCTGAAGTGGTCCATTCTTTATCTTATACATCATCCACAGGTTCAGAGAAAGATTCAGGAGGAGTTGGACACTAAGATTGGGAGGGATCGGCACCCCCAGGCTAATGACAGAAGAAATCTGCCCTACCTGGAGGCCACCATCAGAGAAGTGCTCCGAATCCGGCCAGTCTCACCACTTCTCATCCCTCACGTAGCTCTCTCAGACGCTAATATAGGAGAGTACAGTGTACAGAAAGGGACACGAGTCATCGTTAACCTGTGGTCTTTGCACCACGATGAAAAAGAGTGGAAAAACCCAGAACTATTTAATCCAGAGCGGTTCCTGGATGAGGAAGGCAACAGTCTGTGCTGCCCATCACTCAGTTATCTACCATTTGGTGctggtgtgcgtgtgtgtctcggTGAGGCTCTGGCCAAGTTGGagctcttcctcttcctgtcaTGGATTCTGCAAAGGTTCACTCTGGAGGTACCCGCTGGTCAGCCCCTGCCCGAGCTGCAGGGCAAATTCGGAGTTGTTCTTCAACCCCAGAAATATAAAGTCATTGCCAGGCTCAGGCCAGGCTGGGAAAATAAGCCACAGAGCCAAGAGTCTGAGTCAGGCTAAGATGTAAATTGTTCTTTTTATACTGTTGACTATTTTCAGAGATttgctagtaaaaaaaaaaaaaaaattagaacaaaagagttttgtttttacatattgTCTTAACCCTTGTGTTCAGTTTGCAACTTAGCAATGGATATACTGTTAATGGGTTGACTTTAGACTTTGGGCAGCTGAGATAGTAAATAATTTTGGAAATGGCCAGTCTTGAATACATCTGTTTTTGGGgaacagtaaaaacacacaaacccactTCTCATGCCTGGAGTCGCTCCTACTAGCAGGTGTATGTAACCAGGTATGAGTGTAAATAAGACATGAAGGTAATGTAATAATAAGTGAATTAaccaatttgttttatttttgtaaaaagcaGTTGGTATTGATATATAGATTGATATTTCActagttttatgttttattcttgGGCCAAACTGACCAGAAAATAACCGGTGtaatatatgcaatataatCCTTTTTGATGTTCAGTAGAGAAAAATGAGCTAATCAGCTATAGATCACAAGCCAATATCATGTTGTGGcttttgatttcattatttacacaatatgaacaacagttttcattttttccccaaaggcTTCAGAGGTGTTGTCATGTTTGTCATATTTGTCTGAATTTAGAGAATATAACCATGAGTAAACAGTTATCACAAAACAATTTCAtggtgtttaaaggtgttttatttgtaatgtaCATTGACTCATTCATTTGATTGAGGCTTTATACAAAATGTTACCCATAGCagaaaatgcagttttataaaAAGGCAATTACAGATACAAAACTAAAATATAGTACCAGGTCTTGTGTCAGAGCTAAACTTAAAGAGCAATTGGCTTCTAAAGCCTTCGTCACCTTCGAGCAAACAAACTCACtgcattaatttaaaacagTGCAATGACAACTTattgaggcaaaaaaaaaaaaaaaaaaatcatactgcAATGATCAACTAATTTTGATTTCctctttttaaacaatatgtATTTTTGGTCTCaagatatgaaatgaaaaaatgaagagGACACATGAGTACATAACCCTTAAGcaccaacaataa

Function

NR:

description
steroid 17-alpha-hydroxylase/17,20 lyase

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0004508 steroid 17-alpha-monooxygenase activity molecular_function
GO:0047442 17-alpha-hydroxyprogesterone aldolase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00512 CYP17A; steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939270.2 True 2942 mRNA 0.40 8 14962949 14966801
XM_034302813.1 False 2780 mRNA 0.40 9 14962949 14966801

Neighbor

gene id symbol gene type direction distance location
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 147649 14812705 ~ 14815300 (-)
tlx1 tlx1,LOC107588667,LOC107585374,LOC107694453 coding downstream 171381 14785440 ~ 14791568 (-)
smap1 smap1 coding downstream 184461 14673081 ~ 14778488 (-)
ogfrl1 ogfrl1 coding downstream 320212 14630895 ~ 14642737 (-)
LOC113537600 rims1 coding downstream 367863 14520938 ~ 14595086 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding upstream 30716 14997517 ~ 15009590 (-)
pcgf6 pcgf6,LOC107716281 coding upstream 51682 15018483 ~ 15024828 (-)
LOC113544576 hps6 coding upstream 112222 15079023 ~ 15084329 (-)
chata chat coding upstream 451941 15418742 ~ 15428240 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding upstream 462213 15429014 ~ 15431763 (-)
G46680 NA non-coding downstream 25640 14937096 ~ 14937309 (-)
G46576 NA non-coding downstream 336979 14617653 ~ 14625970 (-)
G46591 NA non-coding downstream 348185 14614516 ~ 14614764 (-)
G46590 NA non-coding downstream 349131 14613541 ~ 14613818 (-)
G46304 LOC108263835 non-coding downstream 671316 14289556 ~ 14291633 (-)
G46711 NA non-coding upstream 45446 15012247 ~ 15012450 (-)
G46750 NA non-coding upstream 94055 15060856 ~ 15061173 (-)
G46754 NA non-coding upstream 97717 15064518 ~ 15065999 (-)
G46869 NA non-coding upstream 140116 15106917 ~ 15153696 (-)
LOC113538630 NA non-coding upstream 617364 15584165 ~ 15591191 (-)
sdhaf4 sdhaf4 other downstream 178196 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 770706 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1527463 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1931753 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2323347 12639530 ~ 12639602 (-)
c3h10orf53 NA other upstream 446112 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1477895 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2012330 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2504386 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2594603 17561404 ~ 17574422 (-)

Expression


Co-expression Network