G46869


Basic Information

Item Value
gene id G46869
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15106917 ~ 15153696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU55417
TTGAACCGCATTTCCCCTGTGAAGCATGCAGACGAGACACACAATAAATGATGGGCAACCAAAGAGACACAGGGTGACAGATGAGACCACCACAGAGGATCATCTGACTTCCCTTTACACAAGAGACTCTTACAGACTTATGGTCCATTGCTAAGTTTAGTGAGAGACAGGAAGAATATGACACATCCAAAATTGTGCATGTCAAGTATGGTATTTATGGTTTATGTTTCCTTAACATTGTCtggaatgtaaatgtaagtagtAATGCCCCAGATTTGAAATCAACAGATCAAcccagaaatgaaaaaaaaaaaacatgaaacacgCACGGAGACAAGGATGGATAGACCTTGCCCCATCTACCAGATGTATCTGGACgctaaacaaacagacaaaaagaagagTCCTTTTGTTACTTACCAGGCATGCCTGATTGGTTTATCAGGTATTTATGGGCAAAGGAGGGAGGCAAACAGAAAGAAGGGATTGTGTTAAAACAAGCCAGCTGGGAGTGATATGTGGGAGAAAGTGTGTAACAGATATAAAAAGAAATCCTCTTCCTTCCATTGAGGTAGGTAAATCTTCCACTGATGAAGATAAAATAACCCGAAAGAACAGATTTACATCAGTGAATAACTGTCAGAGTAAAGCAATGAAATAATATAAGCAAAAACAATAAGCAAGAAAGACACTCGGTGtggaaaaaagggagaaaagggAAGCTGAACTCAGTGAGAAATAGAATGTCAAGGCTGGAGCCGACACAACTCTGAAACAATATGTCTGAGAAAGAGAGTATGAAGAACCTATTATATTTCACAGCACAAATATATCTAAgattaaagacaaaaatataggGGAAGGATAGAAAATAGAGTGAAAATAGCATTACACATTAAGGGGTTCAAGAAATAGTGACCGCAAGACAACAAGACAGAGGTTGAGGAGTGACGAGTAAGAGAGCCTGTGCTTGGAAATGTCCCacaacccccaacccccaaccccccaaCCCCCCAGTTCAATAAAATTAAGTGGTATATGAACCTGTAGATATGTTTCATGAAATTAGCTTCAGAGATTAGTGTGTGATATTCATTCTTGTTGTGAATAATatctgtaaaagaaaatgacagtaGACATAATGAACCAAAGACACTCAGGTGTATTGCAGACGCTGCATACTCACCAATCATTTGTGCAATGGTCTTCTCATACTCTGTAACTATTCTCCTGTAGACAAGGGaggaaataaatttaaattgatttggACTCAAAACACAAAAGTATGCAATTCACAGTACACAATTATCAAGCAAGAACAGAATACTTTGTCTATGCTTGTGCTGGTTAATTCAGTGCAGCTGTTTCTCACATTTTCATCTGTGCTTTATAGTGATGGCTGGCTGTGCCACTTTTTCCTGAAGTTCCCCTGGTAAAGGCAGTGCTTCGAAGGCTGCTGTTTGTTGGCAAAAGCCCACGGGACGGCTTATTTTGGGAAAAGCAGGTTGCCCGCACAGTAAGCAGATGGATTAGCAATGCTTCCCCCTTAGCTTTCTAGGTCTACCTTATGCTAAGCCGAATCAGTCTAATGAAGTAAGCTGCTGTCTTTATTTCCCCTCCCTTCAGCCTCCAGCACATGCCTGGGTcagaaaaagttaaaaataagcACAATAGGCACCATATTCCTAACTGAGTAACTCCTCTTAGTATTTTTCTGTGTTGCAATACAATATTTTATCTTTACTCACTAAAGTGCTATATGCCATTACTGCCCAGTCTCATTTAATATTATCAGGTCTGTTAGATCCAGTGCTATATATTAGGAAAATTAATCAGTGTAGTGCATATTAATGTTATGATTTTGACAGAATAGTTCAATTTCATGTCTGCCTACACCAGCCActtgcaattatccaatcagccaatcatgtggcagcatcacaatgcatacaatcctgcaggtacaggtcaagagcttcagtatagttaaagattggaaaatcATCACCtgtccaatcttcaactgtcccgTTTTGGTGAGGCTGTGCccacctcagattcctgttcttggctgacaggagtgaaacccgatttgtggtcttctgctgttgtagccaatTTGCCTCAAGGTTCTGCATATTgttgttctgagatgcttttctgctcaccatggttgtaaagaatggctagttgagttactgtagccttcctgtcagttagaaccagtctggccattctcttctgtcctctctcatcaaGAACTGCAAGGTTTCTTccacacaattctgtgtaaactcagtTGTACATGAAATTCccatgagatcagcagtttctgaaatagtcaAACCAGCCCACCTGGCACCGACAACTGTGCTATGGTCAATGAGAATTGCTATTGTCAGTGTGCTTTAAGTCAGTGAgaacacatttttccccattttgctgttttgaggaggaaaatatccATCCCTATTCACAGTAAACTGGCCAGCTAGCGTAATATACATGGCGCTTGAAAAAGACGTTTAGTGTCTAACTGTACATTGTCAGGGTGCGCTTCAAGGTAGGTGTGTCTAATAAAGAGGCCAGTAAGGGTGCATCAGGAGGACTTAAAGCTAGAATTtaccaaattttttttgtttattacatttGCTGAAATAATATTTGTGACACTGTAACTTCCTCTGTGGTAGTGTAACGCCTTTGGGATTCTGGGACCCCATGgttttgtcagttttgtttaaaagaatattGAAGAGCAGATGCATTTTCTTTCCTTGTGTTTACACAGGATGTGTGCACATTATTAGATGTGGGGTGAAGGAAACATGCATAACATGCTCATTGCTGTAAGGCAGTGCTGTACAGGTTTGGACCTGGTTTCTTTCTGATTGCATTTTGCTATCTGTTACCTCGTTACAGTGGCCACCACTGGTGGACTGGCCTCCATGTAATGCTGCACTTCTCCCAGCAGGGGATCTCCTTGCTCACCCGGCTTACTGCTACTTATTCATACAATTcatacacatgaacacacacacatagagataTGCTTGAACAAGAAATCCTAACATATCATAAGAGCCATGATGTTTTCTTTCCAAAACATGCTTCTAAATAGCTGATgcaataagcaaaattatctttCATTATCTAACACGTTTCATAATGCACTGAGGTGGCTGAAGCTCTCTGTGGAAACTGTGTGGCTATATGGGATTCAGCAAGAGAGAATAATAGAGATAAATGttggagatttaaaaaaaaacaaaagatgccAGCAGTTTATTCCACACAGAAATCCCAAACCAGTGCACATCATTCCACAATGCGAAAACACCCCATGCACAAACACAGTACAACAAGCTGTTTTGATTACTGCAAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55417 True 3388 lncRNA 0.40 2 15106917 15153696

Neighbor

gene id symbol gene type direction distance location
LOC113544576 hps6 coding downstream 22588 15079023 ~ 15084329 (-)
pcgf6 pcgf6,LOC107716281 coding downstream 82089 15018483 ~ 15024828 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding downstream 97327 14997517 ~ 15009590 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding downstream 140116 14962949 ~ 14966801 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 291617 14812705 ~ 14815300 (-)
chata chat coding upstream 265046 15418742 ~ 15428240 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding upstream 275318 15429014 ~ 15431763 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding upstream 282839 15436535 ~ 15445515 (-)
LOC113544434 LOC108262902,LOC108442942 coding upstream 303815 15457511 ~ 15473941 (-)
hif1an hif1an,LOC107707391 coding upstream 527025 15680721 ~ 15696855 (-)
G46754 NA non-coding downstream 40918 15064518 ~ 15065999 (-)
G46750 NA non-coding downstream 45744 15060856 ~ 15061173 (-)
G46711 NA non-coding downstream 94467 15012247 ~ 15012450 (-)
G46680 NA non-coding downstream 169608 14937096 ~ 14937309 (-)
G46576 NA non-coding downstream 480947 14617653 ~ 14625970 (-)
LOC113538630 NA non-coding upstream 430469 15584165 ~ 15591191 (-)
G47114 LOC101463634 non-coding upstream 443033 15596729 ~ 15599206 (-)
LOC117596835 NA non-coding upstream 465909 15619605 ~ 15673458 (-)
G47130 NA non-coding upstream 543382 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 580137 15733833 ~ 15734079 (-)
sdhaf4 sdhaf4 other downstream 322164 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 914674 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1671431 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2075721 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2467315 12639530 ~ 12639602 (-)
c3h10orf53 NA other upstream 259217 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1291000 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1825435 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2317491 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2407708 17561404 ~ 17574422 (-)

Expression


Co-expression Network