hif1an (hif1an,LOC107707391)


Basic Information

Item Value
gene id hif1an
gene name hif1an,LOC107707391
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15680721 ~ 15696855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934643.2
gtgagtAGGGTGTAGTGTCTGGCTGTGGATCATGCGTCACTGTGTGTGGCTTCACGCAGCCGGAACAGAAAAGCGAGCGCAGTCACACACCGGGTGCCAAACAAACCCGAGCTGCTCTCACCGAGAGGCGCAGTGCACAGCTGCCGAGCCAGCAGACTGTCAGCGGATAACTCAGCAGCTCCGCCTCGCTCAGCTGCTATAAACCTCTTCTAAACCTTTTACCACATACACGGGAAAACAGCGCAGTGTCGACAGCAAGGACAATCACCCGcacggagagacagagacggagACGGAGGAAATGGCCACAGCATCAGTGGCTGAAGCTGAACCGACATCCACCGATGCAGCTAACGCTTTCTTAGGTCTTCATGATGCGGGTTGGACTGAAGCTCAGCTTCGCAAATACCCTTTCCCAATTAGACAAATCCCACGGCTTTCTCATACGGACCCCCGCGCAGAGATCCTAATCAATAACGAGgaACCTGTCGTGTTAACAGATACCAACTTGGTTTATCCAGCGCTCAAGTGGGACATCAGTTACTTGCAAGAGAACATTGGCAATGGGGACTTTTCTGTGTACATTGCTGAAAACCATAAATTCTTATATTATGATGAGAAGAAAATGTCAAACTTGGAGAACTTTGTGCCAAAGTCACGCAGAATAGAGATGAAGTTTTCTGAGTTTGTAGAAAAGTTGCACCAGTTGGAGTTGGATGGAAAACAGAGaGTGTACTTGCAGCAAACCCTGAATGACACAGTTGGGCGAAAAATTGTCGTGGATTTTCTGGGATTCAACTGGAACTGGATTAACAAACAGCAAACCAAACGAAACTGGGGGCAGCTAACATCAAACTTGCTGCTCATAGGCATGGAAGGCAACGTGACACCAGCACATTACGATGAGCAGCAGAATTTCTTTGCACAAATCAAAGGTTACAAGAGATGCATCCTTTTCCCACCAGACCAGTTTGAGTGTCTCTACCCTTACCCTGTTCATCATCCATGTGACAGGCAGAGCCAGGTTGATTTTGAAAACCCTGATTATGAAAAGTTTCCCAAATTTAAAAATGCCCTTGGATATGAGGCTGTTGTTGGACCAGGCGATGTGCTGTACATTCCTATGTACTGGTGGCATCACATTGAGTCGCTGTTAAATGGAGGAGTAACTATCACCGTCAACTTCTGGTACAAGGGTGCACCCACCCCAAAGAGGATAGAGTACCCACTGAAGGCCCATCAGAAGGTGGCCATTATGAGGAACATTGAAAAGATGTTAGGAGAGGCCTTGGGGGACCCACATGAGGTTGGTCCATTGCTGAACATGATGATCAAGGGGAGATACGAGCAGGGTCTGAGTTAATCAGCAGTTTACCTCCAGTGTGCTTTGTGCATAGGGACGTGGATGGATACTTGTCTGTACATTCAGATTGTTCGGTTAACTGCATGGCAGTATTCTGGCTGCATACATTTCAATCTGCTTTTAGTATCTCAAGCTGTTACGTCTGCTAACGGAAGGTACCACTAGAGAGAATTGATTTGCTCTGTCTTTTGAGTCGTCATAATGTGATATACACTGATTAGTTATATGATTTAGTGTGggagaaaataaacattcagaGCATTGCCCCTGCAATGGCAcccatttttgttgtttgttacctTGTCAGAATAGTCAAAAGATGACTGTCAATTTTAAGAGTGCTTCCAGCAAGCCTACCAGCAAGTTGTGTTACTTTAACAATGGCAAATTTTTACTATATACTGTCATATATGCAGGTTATAAAGTTATACTTTTAAAATCAGtgccgattttttttttcttccccttttGCCTCTTTTAACAATCCCCCTGGCCCAAAAGAGTATACAGTACAGTCACAGTAGTGATGCACAGGAAATATCGTTTTAAGCCCTTGAAGGAATGGGACTGttagtaggattttttttttttaatgagttttgACAAttgctaaaaatattttatttttgtgcacaTTAAGTCATGTGCTTGTTTGACTCGTGTATTTGTTTGAATGTAACCTTATTTTACACGTGGTACAATTTTCAGGACTCTTTTGCAAACTAAGGCAAATGTTTCATTTACTCTAGTTAAAGACTATCAAGTCTTTGTGTGTGaattcaataaaaatgtattttacagtaaaaaagtaATCTGTCCCACATAAAAATGATGCTTGTTTGTATAATGACAATGAATCTGAAAGTCAGTAATATGCCCCCTTTTTTCTGAGGCTACTTCAGCATTATTAAAGATGTTATTTAAATCCACACACAAAaggaaacatgaagaaaagtCTAGCTTGCTTATTGTCACAGTTTATTTGCCTAATTGAGATCTGATTAACTGCTTTCCAAATTAGTCTGTTTTATAtttaggttttgtttttgtaatgtagATTTATTAACCTGTGTGTTTATCTTCAGTAGCAGAATGTTTATGATGATTTTTAATTACAGATCTTTGGACCTAAGAGAAGTTCAAATTGATGATTATTGTTCTACAGTGATTATTGCacaaaagtgaattattttgtgGATGTTTGAAATTGTTAGACTTTGCGTACTTGGTTTTGTAAACGCTTACTGTGTATGTGCCAAATTGATTTTCTTAAATGGAGTTGTGATTGAAATcaaagataatttttttttaaattttagtattacagcttttttttatgttgataAAATATCTATGGCTTGACTGTACTTCGAATGGAAAGAGATGGTCAGTATAGCACTTAAACAAACGAGCAAGTATACTAAGTatacttaaattaaattttatttgtatagcttttaacaatttaacaacATTGGCACTTAAAATGTCTGGGTAATAGTCACTGTACATGGGAAGCACTGCATGTGGCTTGTGATTACTTACCTAAGAGGTACTTAAAGCTGcaggattttgaaattttgcCCCTTCTGGTAGACAAATGCTATCCAGGCCGaacattttgtaaatctggttGTACTGCACTCTTCCTCTACACGCGAATTAGTTTCAAGGCTGCGTGTGCACACATTTAGACAGAACTCAAGGCTCTGTCCCAAACAGCACAATGCACACTAAGAAGTATGCCTAAACAGTAATGACACTGTGTAGAGACTTGCTATTTATTATAGTAGTATGCAGTTTAGGAAGCAGCCCAAAATATTCACCACTTGAGATTACTCAGTATTACAGAACAAAGTAACCTTTTTTTGCACGTCAGTGTTACTGTCACAGTTACTGAGTGCCAAATGAAAGAGCAAGACCTCTCAGCAATAGCTTGCATGTTAGCAGCTGTCAGCCGTTTAGCACAGATTGCCTGATCAAGCAGCCGAGCCTGTGCATCGCTGGGCCACTGTGTATCTGTGCTCATTCTGTGGTGTAATACACAGTACATATTCCACAGAATGAACTAGTCGCCTGTTATTTTATCATctaatctgtgtattttgttcttcGGCCTGTCAAGAACATTTGGCATGAACCAGATTGTGTTAGCTGAATACAACTGAATACAACCCTCATCAGATAAAGACTCTCGCTTACCTGATATAAATAgttttgaaatacaaaaatacagagaaactcACCAATTTCTCCTGTTAGTCACTACCACCTACCAACTGGGAATACAAACTTCACAAGGAAGATAAATCGGCTAGCCATCATCTATTATTCACCCTCTTCCCATTAATGAGATGGGAAATGCCTTATctgttcaagaaaaaaaagagaaaaactatCAATCCTGAATCCTTTTACAGTGTAGCACTGGAGTTCACTCTTTCACTCCTGTTTGTTTACACCATCATgctgtttgtctctttctgattggctgtggctCCTGCCAGTCACTGTTTAGCTAGACTTCTTTTGTGTCTGAAGTTGGGGCAAGATGACGTTTGATGTATCTGAGCTAGGGTGCAACATACGGATAAATTTCCTACCAACCCAAGGCCCCGACATAGCTCTGACTGAAAGTAATTATTACAGGGTTGTCAGGGCGACTCGTGCCAGGTCagaaacatcaaaaaaaaaaaaaaaaaaaaaaaattatatgcaCTGTAGTTTCATTTATATCCATTTAGAATTGCTGTTATTTCCCATGTACATAAAAATGGAGAAGTAGTAGGGATGGGGATGTACTGTAAGGGGGGCTGTAAGCCAGAatcattattttgtaaataagaaAATCTTCATTCTTGTGTTCAGTTCATTTATGTCCATTTGTTAGCCAGCTTTCACTTCCATATATCTGCAAAACCACTGTTAAAACACTGGTATCTTGTTTTTGTTAACCCTTAGGGAATGTTTCTGGGTTAGAAATTGCAAAATAGTTTTTACTTGGAGTACTCATCAGATTTGCATAATGACTCCTGTTTAGCCTTAATATTATTAAGagaatataatgtgtgtgtagggtACTGTCTTTTTCAGTCTGTCATTTACCCCATGGGTTTTAAAGAAATGAAGGTATTGCACAATTAAGCATTAAGCagtgcgtgtatatatatatatatatatatatatatgctctaCTGAATAAGATGCTCCACCCTGTTGTGCATGTAGTTGATAAATGAAAGGCTCTTTAGAAGCAAAGGTACACTGTCTGTTTTACCTTGCCAAATGTTTCAGGATGCTTTAATTCATTGTTGAGAAATGTTCCTCTTCTAGAAATAAAGCCTTACCCATTATTTACCTTGAAGTTGTGTGAATACTTAATGAGTTGTATAATATAGTTTAATGGTAACATTAAACTCATTTCAACTCATTCATTCTGGTTCAACTTCAGGGTGCTTATTGTTGCACATGTGTCTGTTATATCCATTCTGAAGCAGAAATGAGTTGTACCTCCCATATTACAGACAGTTATGTGATTAACCACTATAAAAccaatgaaaatattaaatattgtgcAGTAGGGCTATAATTAAactatgaatacattattctgaatgaacagataatgtgtttggaacagatacaaatacagatatgaacagGAGGTGCACTAGTGCTTCACATAGCATCTGGTTCAAACTATTGGTGTGCATCAGGACAGGGTGTCTGtgagacacaaaaaaaaaaaaaa

Function

symbol description
hif1an Predicted to enable several functions, including 2-oxoglutarate-dependent dioxygenase activity; ankyrin repeat binding activity; and transition metal ion binding activity. Acts upstream of or within negative regulation of vasculature development and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; midbrain hindbrain boundary neural rod; and midbrain neural keel. Orthologous to human HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor).

NR:

description
PREDICTED: hypoxia-inducible factor 1-alpha inhibitor

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0036138 peptidyl-histidine hydroxylation biological_process
GO:0042264 peptidyl-aspartic acid hydroxylation biological_process
GO:0042265 peptidyl-asparagine hydroxylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0036139 peptidyl-histidine dioxygenase activity molecular_function
GO:0036140 peptidyl-asparagine 3-dioxygenase activity molecular_function

KEGG:

id description
K18055 HIF1AN; hypoxia-inducible factor 1-alpha inhibitor (HIF hydroxylase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934643.2 True 5114 mRNA 0.39 9 15680721 15696855

Neighbor

gene id symbol gene type direction distance location
LOC113544434 LOC108262902,LOC108442942 coding downstream 206780 15457511 ~ 15473941 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding downstream 235206 15436535 ~ 15445515 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding downstream 248958 15429014 ~ 15431763 (-)
chata chat coding downstream 252481 15418742 ~ 15428240 (-)
LOC113544576 hps6 coding downstream 596392 15079023 ~ 15084329 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding upstream 6304 15703159 ~ 15708376 (-)
scdb scd coding upstream 14275 15711130 ~ 15718040 (-)
trmt2b trmt2b coding upstream 24426 15721281 ~ 15722878 (-)
LOC113544455 LOC108263660 coding upstream 34604 15731459 ~ 15732753 (-)
tysnd1 tysnd1 coding upstream 77289 15774144 ~ 15777662 (-)
LOC117596835 NA non-coding downstream 7263 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 81515 15596729 ~ 15599206 (-)
LOC113538630 NA non-coding downstream 89530 15584165 ~ 15591191 (-)
G46869 NA non-coding downstream 527025 15106917 ~ 15153696 (-)
G46754 NA non-coding downstream 614722 15064518 ~ 15065999 (-)
G47130 NA non-coding upstream 223 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 36978 15733833 ~ 15734079 (-)
G47160 NA non-coding upstream 47685 15744540 ~ 15746774 (-)
G47213 NA non-coding upstream 314715 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 574415 16271270 ~ 16272531 (-)
c3h10orf53 NA other downstream 264238 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 895968 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1488478 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2245235 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2649525 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 747841 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1282276 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1774332 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1864549 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1881323 17578178 ~ 17661419 (-)

Expression


Co-expression Network