chata (chat)


Basic Information

Item Value
gene id chata
gene name chat
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15418742 ~ 15428240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942590.2
TATTGCACTTGACGCATGAAGGTTGGTGGGAGGAGCTTCGAGCATATTTCCCGAGCGGACTGTGGAACTCCAATGCATGTAGCGCAAACAGGGTTCAGAAGACACGACAGAGGAACAGCTCTTTTCCTCTCTAGGAAAAGGATGTCTGCGGGAAAATGAATTTGGATAAAGTTTTTAAGGCTTTCCAAGACACGACAGCGCAGTTCTGaaaaatgtacagcCTGGAAAACCCTTTCACTGATAATCCTCGGGGCTTCATTTCTTCCTGAGGGCAAAGAGGGAAAGTGTGACATTTCCTCTGGTCTGACTGAGCTCTGGAACTTTGAGCATGCCGGTTTTGGAGAGGAAGCCATCAAGGGACCAAGGGGATCACAGTGGCCTCCCTAAGTTGCCTGTCCCAGCATTACAGCAAACATTagatatgtatttaaaatgcatgagACATCTGATCCCTGAAGAGCAGTTCAGAAGGACCAAGGCGATTATTGAGAAGTTTGGAGCTCCTGGTGGGGTGGGAGAGAGACTTCAGAGAAAACTACTGCAAAGAAGAGAGGTTAAAGCTAACTGGgtATATGACTACTGGGTTGAAGATATGTATTTGAATAACAGATTAGCACTACCTGTTAACTCCAGCCCTGCTATGGTCTTCCCAAAGCAGAACTTCAGGACTCCAGGTGATGTACTCAGATTTGCAGCTCATCTAATTTCAGGTGTATTAGAATACAAGGGTCTGATTGATGGACATGCCCTACCAGTGGACTTTGCCCGCGGCCAATTAGCTGGCACGCCACTGTGTATGGAGCAGTACTACAGGCTCTTCAACTCCTACCGCCTACCCGGGCCAAAGACAGACACCCTGGTGGCTCAGAAGAGCTGTGTAATGCCAGAACCAGAGCATATCATAGTGGCCTGTAAAAACCAGTTTTTTGTTCTTGATGTGGTCATCAACTTCCGGAGGCTCAATGAGAAAGATCTGTTCACTCAGCTGCAGAAGATAATGAAGATGGCTGAGAGCAAGGAGGAAAACTTCCCTCCTATTGGACTGCTCACCTCAGATGGGCGGACCGAGTGGGCAGAAGCTCGTAGTGCTCTCATTAAAGATTCTACCAACAGGGACTCTCTGGATATGATTGAGCGTTGCCTGTGTTTGGTGTGCTTGGATGAACCATGTGGCATGGATCTGAGTGACACAAACCGAGCCATGATGATGCTCCATGGAAGAGGGGAGGACAAGAATGGAGGAAACCGCTGGTATGACAAGCCCATGCAGTTTATAGTAGGTGCAGACGGGTGCTGTGGTGTTGTTTGCGAACATTCAGCCTTTGAGGGAATCGTGCTGGTCCAGTGCACAGAATATTTACTGAAGTACAtGAGAGGCAGCCCTTCAAAGTTGGTGCGAGCAGCAAGTGTGAGTGAGTTGCCATCTCCAAGGCACCTGCACTGGAAATGTTCTCCAGAAATCCAAAAATTCCTCAGCTCTTCAGCAGACAAATTACAGCGGCTTGTCAAAAATCTAGACATGAATGTCCACAAGTTCAGCAGTTATGGTAAAGAGTTCAtcaagaaacaaaaaatgagTCCTGACGCTTACATACAAGTGGCTCTGCAGTTTGCATTTTACAGATGTCATGGAAGACCTGTGCCAACCTATGAGAGTGCATCAATCCGCCGCTTCCAGCAGGGTCGAGTGGAAAACATTCGCTCTTCTACCGCTGAGGCCTTGGAATTTGTGAAAGCCATGACTGATAAAAAGTCCAGTCTGATGGATGCTGAGAAGATGGAGAAGTTATGTGATGCTATTAAGGCCCAAACCAATTATACAATACTGGCTATTACAGGGATGGCAATAGACAATCACTTACTTGGACTGCGAGAAATCTCTAAGGAGCTCAACCTGGAGAAGCCAGAGATTTTCACAGATGAGACCTACATCATCAGCAACCAATTCATCCTCTCCACAAGTCAGGTTCCTACGACTGTGGAGATGTTTTGCTGCTATGGCCCCGTGGTCCCTAATGGCTATGGAGCCTGCTACAATCCCCAGTCGGACCACATCATTTTCTGtgtgtccagtttctgtgacaGCCCCGAGACCTCTTCAGACATGTTTGTGAAAGCTCTGGTGGAGTGCCTGGGGGAGATGCAGGATCTGTGTAACACTCAAGCCAAGCATTGTAACACCAGAGACAGGACTGAAGAGGCCAATGAAGCTGTGAGGGATAGAGGAAAGTCATAATATACACGCTTATAAATGGGTTCTTCAATgattctttaagggttcattggataattaagggtttttAGCTTCTGAAAAGaattctacttggaaccctttctggcAGGGAAACACACTATTGTAGGGGCCATAGAGGACCTTTAAGTGTTCTCCCTGAAGGAAGAACCCATAGGAGTGTATCTGAGAAGTAAATGCCCACCAGGGGTTTCCATCCGAATTATTAACTTTTATTCTACCATAAGATGAGTAGTGTAATTTAGCTATTGTGTCCAAAACTCCAAAGACTAATATACTATTATTATGCGGtagataaaatattaatgtgtgtgtaacataATACAGTTTAAGATTTTTGTGGTGCCAAAAAACAAGCTGTGAGTTTTGTACTACTACAAAGACTAGATAAAAAGACTAAACAAGAATTCCAGATTGTTAGAAAGTATTTACCCTAACATCAGCGGATTGCAAGgtcaaatcctgatgatgccaggATGTTGTTTGGGAGTCCAAGAAAACAAACTTGGCCATGCTATCGGGGTGAGAGGGAtggcatttctctctcttctctgtcaatcagagtgacactaacCAATGGTAGGTGTCTGTGAGGTCACTGTGTGTGGAAGAGAGTAGATAACGCTTTCCTCCCAGCTTTACTGTGATGTAGCacaagcagcagtttgaaaagatgcagttggcggTCTTCATGTATGTCAGAGGAAGCACAcgctagccttcaccctctaCAGTTGGTCCATGTTGTGTGATAAAGGAGAGCTGGCTAGTGAGTGAGAATTGGCAAGTGCCCAAATTGGAGGAAAATGAACAGAGGCTTTAATACAGATTGTATAAACTAAAAttgaattatactgtatgtactagTGATGGGACCATATCAAGAATCTGTTGTTTTCATGGTGtttatacattaaattacatgACCCTACTATATAAGTGCTGCCATTAAAATATTTGGTTAGGTGAAAATGTAAGAGAAgatttgtttgttgtgtttaagAAAATGAgttgcactatatggccaaaggtttgtggacacctgagcatcacacccttgcgctttttgaacat
>XM_026942598.2
TATTGCACTTGACGCATGAAGGTTGGTGGGAGGAGCTTCGAGCATATTTCCCGAGCGGACTGTGGAACTCCAATGCATGTAGCGCAAACAGGGTTCAGAAGACACGACAGAGGAACAGCTCTTTTCCTCTCTAGGAAAAGGATGTCTGCGGGAAAATGAATTTGGATAAAGTTTTTAAGGCTTTCCAAGACACGACAGCGCAGTTCTGGGCAAAGAGGGAAAGTGTGACATTTCCTCTGGTCTGACTGAGCTCTGGAACTTTGAGCATGCCGGTTTTGGAGAGGAAGCCATCAAGGGACCAAGGGGATCACAGTGGCCTCCCTAAGTTGCCTGTCCCAGCATTACAGCAAACATTagatatgtatttaaaatgcatgagACATCTGATCCCTGAAGAGCAGTTCAGAAGGACCAAGGCGATTATTGAGAAGTTTGGAGCTCCTGGTGGGGTGGGAGAGAGACTTCAGAGAAAACTACTGCAAAGAAGAGAGGTTAAAGCTAACTGGgtATATGACTACTGGGTTGAAGATATGTATTTGAATAACAGATTAGCACTACCTGTTAACTCCAGCCCTGCTATGGTCTTCCCAAAGCAGAACTTCAGGACTCCAGGTGATGTACTCAGATTTGCAGCTCATCTAATTTCAGGTGTATTAGAATACAAGGGTCTGATTGATGGACATGCCCTACCAGTGGACTTTGCCCGCGGCCAATTAGCTGGCACGCCACTGTGTATGGAGCAGTACTACAGGCTCTTCAACTCCTACCGCCTACCCGGGCCAAAGACAGACACCCTGGTGGCTCAGAAGAGCTGTGTAATGCCAGAACCAGAGCATATCATAGTGGCCTGTAAAAACCAGTTTTTTGTTCTTGATGTGGTCATCAACTTCCGGAGGCTCAATGAGAAAGATCTGTTCACTCAGCTGCAGAAGATAATGAAGATGGCTGAGAGCAAGGAGGAAAACTTCCCTCCTATTGGACTGCTCACCTCAGATGGGCGGACCGAGTGGGCAGAAGCTCGTAGTGCTCTCATTAAAGATTCTACCAACAGGGACTCTCTGGATATGATTGAGCGTTGCCTGTGTTTGGTGTGCTTGGATGAACCATGTGGCATGGATCTGAGTGACACAAACCGAGCCATGATGATGCTCCATGGAAGAGGGGAGGACAAGAATGGAGGAAACCGCTGGTATGACAAGCCCATGCAGTTTATAGTAGGTGCAGACGGGTGCTGTGGTGTTGTTTGCGAACATTCAGCCTTTGAGGGAATCGTGCTGGTCCAGTGCACAGAATATTTACTGAAGTACAtGAGAGGCAGCCCTTCAAAGTTGGTGCGAGCAGCAAGTGTGAGTGAGTTGCCATCTCCAAGGCACCTGCACTGGAAATGTTCTCCAGAAATCCAAAAATTCCTCAGCTCTTCAGCAGACAAATTACAGCGGCTTGTCAAAAATCTAGACATGAATGTCCACAAGTTCAGCAGTTATGGTAAAGAGTTCAtcaagaaacaaaaaatgagTCCTGACGCTTACATACAAGTGGCTCTGCAGTTTGCATTTTACAGATGTCATGGAAGACCTGTGCCAACCTATGAGAGTGCATCAATCCGCCGCTTCCAGCAGGGTCGAGTGGAAAACATTCGCTCTTCTACCGCTGAGGCCTTGGAATTTGTGAAAGCCATGACTGATAAAAAGTCCAGTCTGATGGATGCTGAGAAGATGGAGAAGTTATGTGATGCTATTAAGGCCCAAACCAATTATACAATACTGGCTATTACAGGGATGGCAATAGACAATCACTTACTTGGACTGCGAGAAATCTCTAAGGAGCTCAACCTGGAGAAGCCAGAGATTTTCACAGATGAGACCTACATCATCAGCAACCAATTCATCCTCTCCACAAGTCAGGTTCCTACGACTGTGGAGATGTTTTGCTGCTATGGCCCCGTGGTCCCTAATGGCTATGGAGCCTGCTACAATCCCCAGTCGGACCACATCATTTTCTGtgtgtccagtttctgtgacaGCCCCGAGACCTCTTCAGACATGTTTGTGAAAGCTCTGGTGGAGTGCCTGGGGGAGATGCAGGATCTGTGTAACACTCAAGCCAAGCATTGTAACACCAGAGACAGGACTGAAGAGGCCAATGAAGCTGTGAGGGATAGAGGAAAGTCATAATATACACGCTTATAAATGGGTTCTTCAATgattctttaagggttcattggataattaagggtttttAGCTTCTGAAAAGaattctacttggaaccctttctggcAGGGAAACACACTATTGTAGGGGCCATAGAGGACCTTTAAGTGTTCTCCCTGAAGGAAGAACCCATAGGAGTGTATCTGAGAAGTAAATGCCCACCAGGGGTTTCCATCCGAATTATTAACTTTTATTCTACCATAAGATGAGTAGTGTAATTTAGCTATTGTGTCCAAAACTCCAAAGACTAATATACTATTATTATGCGGtagataaaatattaatgtgtgtgtaacataATACAGTTTAAGATTTTTGTGGTGCCAAAAAACAAGCTGTGAGTTTTGTACTACTACAAAGACTAGATAAAAAGACTAAACAAGAATTCCAGATTGTTAGAAAGTATTTACCCTAACATCAGCGGATTGCAAGgtcaaatcctgatgatgccaggATGTTGTTTGGGAGTCCAAGAAAACAAACTTGGCCATGCTATCGGGGTGAGAGGGAtggcatttctctctcttctctgtcaatcagagtgacactaacCAATGGTAGGTGTCTGTGAGGTCACTGTGTGTGGAAGAGAGTAGATAACGCTTTCCTCCCAGCTTTACTGTGATGTAGCacaagcagcagtttgaaaagatgcagttggcggTCTTCATGTATGTCAGAGGAAGCACAcgctagccttcaccctctaCAGTTGGTCCATGTTGTGTGATAAAGGAGAGCTGGCTAGTGAGTGAGAATTGGCAAGTGCCCAAATTGGAGGAAAATGAACAGAGGCTTTAATACAGATTGTATAAACTAAAAttgaattatactgtatgtactagTGATGGGACCATATCAAGAATCTGTTGTTTTCATGGTGtttatacattaaattacatgACCCTACTATATAAGTGCTGCCATTAAAATATTTGGTTAGGTGAAAATGTAAGAGAAgatttgtttgttgtgtttaagAAAATGAgttgcactatatggccaaaggtttgtggacacctgagcatcacacccttgcgctttttgaacat

Function

symbol description
chat Predicted to enable choline O-acetyltransferase activity. Predicted to be involved in acetylcholine biosynthetic process and neuromuscular synaptic transmission. Predicted to act upstream of or within several processes, including adult walking behavior; establishment of synaptic specificity at neuromuscular junction; and rhythmic excitation. Predicted to be located in axon and neuronal cell body. Predicted to be active in cytoplasm and neuron projection. Implicated in Alzheimer's disease and congenital myasthenic syndrome 6.

NR:

description
PREDICTED: choline O-acetyltransferase

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0007626 locomotory behavior biological_process
GO:0004102 choline O-acetyltransferase activity molecular_function

KEGG:

id description
K00623 CHAT; choline O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942590.2 True 3325 mRNA 0.45 15 15418742 15428240
XM_026942598.2 False 3263 mRNA 0.45 15 15418742 15428240

Neighbor

gene id symbol gene type direction distance location
LOC113544576 hps6 coding downstream 334413 15079023 ~ 15084329 (-)
pcgf6 pcgf6,LOC107716281 coding downstream 393914 15018483 ~ 15024828 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding downstream 409152 14997517 ~ 15009590 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding downstream 451941 14962949 ~ 14966801 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding downstream 603442 14812705 ~ 14815300 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding upstream 774 15429014 ~ 15431763 (-)
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding upstream 8295 15436535 ~ 15445515 (-)
LOC113544434 LOC108262902,LOC108442942 coding upstream 29271 15457511 ~ 15473941 (-)
hif1an hif1an,LOC107707391 coding upstream 252481 15680721 ~ 15696855 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding upstream 274919 15703159 ~ 15708376 (-)
G46869 NA non-coding downstream 265046 15106917 ~ 15153696 (-)
G46754 NA non-coding downstream 352743 15064518 ~ 15065999 (-)
G46750 NA non-coding downstream 357569 15060856 ~ 15061173 (-)
G46711 NA non-coding downstream 406292 15012247 ~ 15012450 (-)
G46680 NA non-coding downstream 481433 14937096 ~ 14937309 (-)
LOC113538630 NA non-coding upstream 155925 15584165 ~ 15591191 (-)
G47114 LOC101463634 non-coding upstream 168489 15596729 ~ 15599206 (-)
LOC117596835 NA non-coding upstream 191365 15619605 ~ 15673458 (-)
G47130 NA non-coding upstream 268838 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 305593 15733833 ~ 15734079 (-)
c3h10orf53 NA other downstream 2259 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 633989 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1226499 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1983256 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2387546 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1016456 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1550891 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2042947 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2133164 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 2149938 17578178 ~ 17661419 (-)

Expression


Co-expression Network