RNA id: TU55268


Basic Information

Item Value
RNA id TU55268
length 274
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G46754
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15064518 ~ 15065999 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGATTATACCTGAAATACCTGAATACCAGAGAGCAATGAGGCTTTATTTCTCTACCAGCCACTTTGCCACTTACAATATAAGGAAGGTGATTAGAAAAGTGGCCCAGTAAAAACTCCATCTTCTGCATTTGATGCTTTTGGTCTGCTCTTGGTACATGCGGCCTCCACAATTCCCACAGCAACGGCAGCATGCGAAGCACAGGCCAATTAAGGGCATGAGGAGGATGTACAGAATCCCAATGGCCACGCACACCAGAAATCCCACCTCATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55261 lncRNA downstream 3861 15060856 ~ 15061173 (-) True G46750
TU55218 lncRNA downstream 52584 15012247 ~ 15012450 (-) True G46711
TU55183 lncRNA downstream 127725 14937096 ~ 14937309 (-) True G46680
TU55026 lncRNA downstream 439064 14617653 ~ 14625970 (-) True G46576
TU55042 lncRNA downstream 450270 14614516 ~ 14614764 (-) True G46591
TU55417 lncRNA upstream 41610 15106917 ~ 15153696 (-) True G46869
XR_003403869.2 lncRNA upstream 518858 15584165 ~ 15591191 (-) True LOC113538630
TU55698 lncRNA upstream 531422 15596729 ~ 15599206 (-) True G47114
XR_004577817.1 lncRNA upstream 554298 15619605 ~ 15673458 (-) True LOC117596835
TU55717 lncRNA upstream 631771 15697078 ~ 15697414 (-) True G47130
XM_026945723.2 mRNA downstream 40206 15018483 ~ 15024828 (-) True pcgf6
XM_026944180.2 mRNA downstream 55444 14997517 ~ 15009590 (-) False nt5c2a
XM_026943448.2 mRNA upstream 13716 15079023 ~ 15084329 (-) True LOC113544576
XM_026942915.2 mRNA upstream 347606 15412913 ~ 15416294 (-) True c3h10orf53
XM_026942598.2 mRNA upstream 353435 15418742 ~ 15428240 (-) False chata
XM_026942590.2 mRNA upstream 353435 15418742 ~ 15428240 (-) True chata
XM_026942611.2 mRNA upstream 363707 15429014 ~ 15431763 (-) True slc18a3a
TU55100 other downstream 280300 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 872791 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 2033838 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 2330752 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 2396143 12668820 ~ 12668891 (-) True trnae-cuc_9
TU55523 other upstream 348634 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 1913824 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 1913824 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 1913824 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 2405880 17471187 ~ 17476061 (-) True cisd1