XLOC_005316 (maff)


Basic Information

Item Value
gene id XLOC_005316
gene name maff
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19340786 ~ 19346678 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010205
tatgaaTGAAAGGATCCAGCCCGCTGATGGTGGACTGATTCCGGGAAAAAAGGCGTTTAGCTCTCCATTCCGTCCAAACACGGCCGTGCTGCGATAACGCGTGTCAGACGAAACACCGGACCAGCGCTGAGAATCGTTAACTGACCCATATTCACCTTCGTGCGAGGTCAGCAAAGACGAGAAATCAACAACAGGTTTCAGGGACACATAAAACCAGACAATGACTTCAGACGGCAGAGCTAGTAAAGCCCTCAAGGTGAAAAGGGAATGCGGAGAGAACATCCCCGTGCTGAGCGACAGCGAGCTCATGTCTCTGTCAGTACGTGAACTCAACATGCACTTACGTGGTTTGTCTCGCGAGGAGGTACAGAAGCTGAAGCAGAGGCGGCGCACGCTAAAGAACCGCGGCTACGCTGCCAGCTGCCGGGTGAAGCGCGTGTCCCAGCGCGAGGCTCTGGAGCAGCAGAAGAAGGAGCTCCAGCAGGAGGTAGAACGGCTCGGGGCAGAGAACGCCGGCATGCGGCGTGAGCTGGAAGGCTTGGGAGCCCGTCTCGCCGCCCTTCAGCGGTTCGCCAGAGGTCTGGAGTCTGGAGGTGGCAGTTTACTGGCAACAACACCCCGTCTGAACACAGCCTCCGTCATCACCATAGTCAAGACCCCACAGCAGGTGCACAATCCTAGAGAAGGAGCATCCTAGAACATCgcctcacacacacatattaggTACACAGTATGATCGCACAGACAGACAGGACCATGTATACTCGCATATACAGGAAGTACAAATTGGGAAAGACAGACTCGCTTATATGTATACAAGTCGTATATTATGTCCAAGAATATTCTCAGTACTGTTGTTGTGGCCTCAAATATAATGACAAGTGTATTCATCTGCACAAAAAAGCTATAGGTAATAATAGCGTTATGCTATTTATTCTGCGCATTATTACTGTGGTGACACGTGATCAATAATAGTCgtaaaacttgtcttttttaatgAGGGACCAACAACATTTCAGAagctgtttctcttttttttgctggattatctCTGTGATTTATGGGAGTAGAAAGTGCAGATCTGTCGATACATGCAAttgatatattttaatgtttgtattaATAGGACAAATGTTCCAACAGCAGACGTGAAAGCTATTCTATTTGTGTTTGAAACAAAGGTAATTTGTGCTGTGATTGGTCTGAATACTACTTCTAGTTTGGGGTTATTCTTtaattgttgtgttttgtttgtttgtttgttttgtttttttgtcatgtgTTGGTAGGTTCGTAATGGTAAGTTATACAGCCCCGTTATTTGTAATAAGGTTCAGTATGTGTGAGGGTCACATTTGTACTAATATTAGAGCGACTTGTTTGTAGtggtatttttgtatttaaaaccaagaccatatatgaatatatatatatattatttgctatttatgatcgaaaaaaaaatgtatctgaaTATTTTGGAAAGCTGGAATATAACAAAAAA

Function

symbol description
maff Enables DNA binding activity and protein heterodimerization activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Orthologous to human MAFF (MAF bZIP transcription factor F).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045604 regulation of epidermal cell differentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1280 Enables DNA binding activity and protein heterodimerization activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Orthologous to human MAFF (MAF bZIP transcription factor F).

Ensembl:

ensembl_id ENSDARG00000028957

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010205 True 1504 mRNA 0.44 3 19340786 19346678

Neighbor

gene id symbol gene type direction distance location
XLOC_005315 si:ch211-141o9.10 coding downstream 58666 19272963 ~ 19282120 (-)
XLOC_005314 cdc42ep1a coding downstream 89932 19240610 ~ 19250854 (-)
XLOC_005313 zc3h7bb coding downstream 154921 19158832 ~ 19185865 (-)
XLOC_005312 tefa coding downstream 187609 19144833 ~ 19153177 (-)
XLOC_005311 aco2 coding downstream 221610 19106571 ~ 19119176 (-)
XLOC_005317 shisa9a coding upstream 445603 19792281 ~ 19865585 (-)
XLOC_005318 NA coding upstream 710293 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 coding upstream 842491 20189169 ~ 20189286 (-)
XLOC_005320 rhbdf1b coding upstream 880717 20227395 ~ 20303438 (-)
XLOC_005321 NA coding upstream 968317 20314995 ~ 20334709 (-)
XLOC_005303 AL772266.1 non-coding downstream 602257 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 886379 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 1113056 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 1613246 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 1633885 17706792 ~ 17706901 (-)
XLOC_005327 SLC16A6 non-coding upstream 1228962 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 2223105 21569783 ~ 21569899 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_02207083_02208978 MAFF, MAFFL coding CI01000063 null 2207083 ~ 2209144 (+)