Fish Transcriptome and Expression Database

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model fish

XLOC_005303 (AL772266.1)

Basic Information

Item	Value
gene id	XLOC_005303
gene name	AL772266.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	18738413 ~ 18738529 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010183
aacagcacagcgatctgctgatgtttaaaatcctgtagtgtgaactaggcttaagcaggactgagcctggtcagtacctggatgggagagcacttgggaaaaactaggttgctgttg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108358

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00010183	True	117	rRNA	0.48	1	18738413	18738529

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_005302	zdhhc4	coding	downstream	159981	18571455 ~ 18578432 (-)
XLOC_005301	pgp	coding	downstream	169579	18565553 ~ 18568834 (-)
XLOC_005300	bricd5	coding	downstream	177913	18551597 ~ 18560500 (-)
XLOC_005299	tex2l	coding	downstream	218591	18468066 ~ 18519822 (-)
XLOC_005298	NA	coding	downstream	284006	18453207 ~ 18454407 (-)
XLOC_005304	shisa8b	coding	upstream	53786	18792315 ~ 18883079 (-)
XLOC_005305	desi1b	coding	upstream	157128	18895657 ~ 18898475 (-)
XLOC_005306	ep300a	coding	upstream	188536	18927065 ~ 18961491 (-)
XLOC_005307	chadlb	coding	upstream	250957	18989486 ~ 19007834 (-)
XLOC_005308	rangap1b	coding	upstream	269397	19007926 ~ 19028068 (-)
XLOC_005295	NA	non-coding	downstream	510683	18224534 ~ 18227730 (-)
XLOC_005291	NA	non-coding	downstream	1010873	17721801 ~ 17727540 (-)
XLOC_005289	dre-mir-2192	non-coding	downstream	1031512	17706792 ~ 17706901 (-)
XLOC_005275	BX000534.1	non-coding	downstream	1739971	16997206 ~ 16998442 (-)
XLOC_005318	NA	non-coding	upstream	1318442	20056971 ~ 20120711 (-)
XLOC_005319	CR352324.1	non-coding	upstream	1450640	20189169 ~ 20189286 (-)
XLOC_005321	NA	non-coding	upstream	1576466	20314995 ~ 20334709 (-)
XLOC_005327	SLC16A6	non-coding	upstream	1837111	20575640 ~ 20584439 (-)
XLOC_005332	CR753823.1	non-coding	upstream	2831254	21569783 ~ 21569899 (-)

Expression

Co-expression Network