XLOC_005305 (desi1b)


Basic Information

Item Value
gene id XLOC_005305
gene name desi1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18895657 ~ 18898475 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010187
AGTGAATAAGCACATTTGTCATAACCGGTGTCCAAATATCTCGAGTCACTGTTGCCAAACGAATGCTGAACACCGCGTTGGACCTGTCAAACTTTCGTGGTTAGGATAATTTGTTAAAATACTTTGTGTTCGTTTTATGGATGTGTGATAATGAGACTTTGAGACACCAAAACAGTGAAGTCTGCCTTTTTCGAGTCGAAAACTCAAGATAGATTTACGTTTGTTTACAGTAGCGTTGCGTTTTTGTTTGTAAACAACACTTTGTTCTGAATCAGTTGCCATGGCTAATGGAAGTTCTTACACCGTTCAGCTGTACGTTTATGACCTGTCAAAAGGACTGGCCCGTCAGCTGAGCCCCATGATGTTAGGAAAGACAGTCGAGGGAATATGGCACACTGGAATAGTGGCTTACGGGGAAGAGTTTTTCTTTGGAGGAGGAGGTGTTACAAGCTGCTATCCTGGTTGTACTATTCTTGGTATGCCTGATTCCACAGTGGACCTAGGAAACACAGAAGTTCCTCGGGACCTTTTTCAGGAATATCTGTCTTCGCTCGGGGAGTCCACTTATAGACCTGAAAAATACCACCTTTTTGAACACAACTGTAACACCTTCAGCGCTGAAGTTGCGCAGTTTTTAACAGGAAAAAAGATTCCCTCATACATCACGGATCTTCCATCTGAAGTGCTCTCTACACCTTTTGGACAAGCGCTCCGTCCTCTTCTGGATTCAATCACCGTCACTCCATCCGGGAACAATGGCATGAATGGATATGGCCAGAGGTAGAAGATCTGGCTGCATCTAAGAATGTATTAATACAGCAGTCATGAAGAGTCACATTGTGCCTTTCAAGATCAAAAATAGCTTTTATATAAAGCAGGGCTTTCAGTTTCTCTGCTCTGCCTTTTCATAAAGTGATACATTTTCACTCTCTTTTTTTATGCTATCTTCAGTGATCTGCTGTGTAGACAGAGGGACCAATTAATCTGTATTGTTGACTCTTTAGAATAGAATATACAAATCCACTGGGACAAACAACCAGTGGATAGGAAATGTGAAAGAGGACATTTTTACCAGGACTGcaaatgaattttaaaataaacaaaatcatgtGGTATAATTGGATAgaacacccaaaaatgaacattctgtctgTTACGCATTTTCTGAGTTCATGTTAAGCACAAATAAAGATATACTGAGGAATGTTGGAAAGTAGCAGCCATTGACTTTTTTTGTTCCCACTATGAATgtcatttccaacattcttcagaatatgttGTTTTGGGTTCAACGGATGTCagaaattcataaatgtttaaagtccGCATGAAACGGAAGCTgtgacagcttttttttt
>TCONS_00010188
ATGCTGAACACCGCGTTGGACCTGTCAAACTTTCGTGTTGCCATGGCTAATGGAAGTTCTTACACCGTTCAGCTGTACGTTTATGACCTGTCAAAAGGACTGGCCCGTCAGCTGAGCCCCATGATGTTAGGAAAGACAGTCGAGGGAATATGGCACACTGGAATAGTGGCTTACGGGGAAGAGTTTTTCTTTGGAGGAGGAGGTGTTACAAGCTGCTATCCTGGTTGTACTATTCTTGGTATGCCTGATTCCACAGTGGACCTAGGAAACACAGAAGTTCCTCGGGACCTTTTTCAGGAATATCTGTCTTCGCTCGGGGAGTCCACTTATAGACCTGAAAAATACCACCTTTTTGAACACAACTGTAACACCTTCAGCGCTGAAGTTGCGCAGTTTTTAACAGGAAAAAAGATTCCCTCATACATCACGGATCTTCCATCTGAAGTGCTCTCTACACCTTTTGGACAAGCGCTCCGTCCTCTTCTGGATTCAATCACCGTCACTCCATCCGGGAACAATGGCATGAATGGATATGGCCAGAGGTAG

Function

symbol description
desi1b Predicted to enable hydrolase activity. Predicted to be involved in protein modification by small protein removal. Orthologous to human DESI1 (desumoylating isopeptidase 1).

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-936 Predicted to enable hydrolase activity. Predicted to be involved in protein modification by small protein removal. Orthologous to human DESI1 (desumoylating isopeptidase 1).

Ensembl:

ensembl_id ENSDARG00000089529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010187 False 1358 mRNA 0.40 6 18895657 18898475
TCONS_00010188 True 546 mRNA 0.47 7 18896231 18898413

Neighbor

gene id symbol gene type direction distance location
XLOC_005304 shisa8b coding downstream 12578 18792315 ~ 18883079 (-)
XLOC_005303 AL772266.1 coding downstream 157128 18738413 ~ 18738529 (-)
XLOC_005302 zdhhc4 coding downstream 317225 18571455 ~ 18578432 (-)
XLOC_005301 pgp coding downstream 326823 18565553 ~ 18568834 (-)
XLOC_005300 bricd5 coding downstream 335157 18551597 ~ 18560500 (-)
XLOC_005306 ep300a coding upstream 28590 18927065 ~ 18961491 (-)
XLOC_005307 chadlb coding upstream 91011 18989486 ~ 19007834 (-)
XLOC_005308 rangap1b coding upstream 109451 19007926 ~ 19028068 (-)
XLOC_005309 si:ch73-139e5.4 coding upstream 167204 19065679 ~ 19091214 (-)
XLOC_005310 csdc2a coding upstream 200789 19099264 ~ 19103490 (-)
XLOC_005298 NA non-coding downstream 441250 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 667927 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 1168117 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 1188756 17706792 ~ 17706901 (-)
XLOC_005318 NA non-coding upstream 1158496 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 1290694 20189169 ~ 20189286 (-)
XLOC_005321 NA non-coding upstream 1416520 20314995 ~ 20334709 (-)
XLOC_005327 SLC16A6 non-coding upstream 1677165 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 2671308 21569783 ~ 21569899 (-)

Expression


Co-expression Network