G167684


Basic Information

Item Value
gene id G167684
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18458455 ~ 18458794 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU198523
AAAAGACCCACAAATGTAAGCATTATTGACgttaataaagattttaatgaacataaatcatttgttttatgttacattCAATCGTGTGTTCATATTTACGGTGATGTTAttcaaagaaatgtttgcaaaaaaTCGCTAAAGTTTGTTAACGTCATATAATTACCGACTGCACAATAATGCCACAACGTATTTTCATGTCTGATCAGGGCTGTAACCACCAAAGACATTGAGGGGTCTAGTCCCCCCAATAATCAGAAATCGCTAAACTTTTTTCTCAAATATTGCCAAttcgagagagagaattagGACCTAGATCACGTATGATGATGTGTAACGGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198523 True 340 lncRNA 0.34 1 18458455 18458794

Neighbor

gene id symbol gene type direction distance location
evla LOC108425620,LOC108270303 coding downstream 21302 18415378 ~ 18437153 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding downstream 54486 18399711 ~ 18403969 (-)
c10h1orf115 NA coding downstream 167980 18287763 ~ 18290475 (-)
alkal2b LOC108425626 coding downstream 209223 18243360 ~ 18249232 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 227980 18191959 ~ 18230475 (-)
eml1 eml1 coding upstream 678 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 61103 18519897 ~ 18525899 (-)
rpusd2 rpusd2,LOC103399345 coding upstream 92889 18551683 ~ 18556050 (-)
pcmtl pimt,pcmtl,LOC108425617,LOC105015970,LOC107392292,LOC107719513 coding upstream 97324 18556118 ~ 18563366 (-)
ivd ivd,LOC107719458 coding upstream 200494 18659288 ~ 18666320 (-)
G167618 NA non-coding downstream 53680 18404553 ~ 18404775 (-)
G167617 NA non-coding downstream 59031 18399171 ~ 18399424 (-)
G167580 NA non-coding downstream 141756 18316478 ~ 18316699 (-)
G167579 NA non-coding downstream 155116 18302105 ~ 18303339 (-)
G167577 NA non-coding downstream 161900 18294983 ~ 18296555 (-)
G167783 NA non-coding upstream 105177 18563971 ~ 18564379 (-)
G167786 NA non-coding upstream 112709 18571503 ~ 18571893 (-)
G167802 NA non-coding upstream 137787 18596581 ~ 18596886 (-)
G167883 NA non-coding upstream 343647 18802441 ~ 18802693 (-)
LOC113538783 NA non-coding upstream 821484 19280278 ~ 19285841 (-)
gdf7 LOC108270114 other downstream 76000 18375403 ~ 18382455 (-)
G167566 apob other downstream 142248 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 833921 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1210632 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1559725 16873279 ~ 16898730 (-)
bahd1 bahd1,LOC108436768 other upstream 141501 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 380821 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 502914 18961708 ~ 18966613 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 1128130 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 1130574 19589368 ~ 19595214 (-)

Expression


Co-expression Network