alkal2b (LOC108425626)


Basic Information

Item Value
gene id alkal2b
gene name LOC108425626
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18243360 ~ 18249232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934300.2
tttttttttttacatgcttaAAGGAAGTGGTAATTTTGGGATGGAGTAAACGAAAGCAGATAAGGCCTGGCTGTTCTCACCTCGGTCCTCGTGCGAGAAACTATGCATTTGTCGCGTCACAACACCGGCTTCCTGCTCCAACGCGCCACATGCGCGTGCACACGGGCTGTTTCAGACTAATTGAGCCTAATTACGTTGTCTTTTGGCTTTCCAGTAATGGAGCAAGTGAAATAAATAGGAATCGATTGCGGTATCCGATACTGGAAGATTAAAAAaggagtaagagagagagagagagagagagagagagagattaaaagaCTAAAATACTATTCAACCACAAGTCCATGTTTAGAAACGGATACAGAGATTCCCGTTTAAGGGAATGAAAAGCTTGTTAGTAGCCTAATTGGAGGGGGAAACCACTTTACCTGAACCACAAGTGGACTCGTGCAGCAGTTATGAGACGGTGACCGGAATAAAGAAAGAGCAGTAAAATGCGTTTTTGGAGGAGCGCTCCGACATGCCGGGACAATCCGCATGGGACGAGTCCTTACGTCTGCAGCACAGGATAAAAAGCGAGGGAACTCATGCCGGATGAATGTGACACCAACATCACCGAGAGACGCGacggaggagaaggaggaaaaaagaagaaagagaagaagaaaaaggaaaagtcaCCGGCTTTCTCTCACTTCTCACTCACTACACAACTCACAGGCGCCTGGAAACGCAGCCTGTAAACAGACTGGGCTCTCTGTCTGCCATGGTGCACTAGATCTCTAACAGGACAACTACCTGCAGAAGCAGAAAGCAAGCCTACCGACTCCTACATTACCGTATTGATCTGCTTCCACCCCGGGAGGACACTCCACCACCGTGACAGTCGCACTACAGGCCAGAAGTCCGCGCGCCTCAGCAGCGAGAGAGGCACGCTTCAGCTGCGCTTCAGCATGAGCGTCCTGCGCGCGCCAGTCATCACTGCGCTCGCGCTGCTGATCGTGAGCGGCGGTTCCGGCGGACGGAGCGGCTCTGCGTCCGCGcgctccaccaccaccaccagcagcagcagcctgcTGCAGCTGCTCACGGCCAGCCGGAGAGAAGCGGCCGAGCATCACGCGCACTCCACCGAGCACCACGCACACTCTCCGCTTCCCATCAAGACCGACTACTCCATAGAGTCGAGAGAAGGGAACGAAGTCAACAAATCCAATCAGCATGACCAGACACTGGACGTCTTTCCTAGAGATGTGCGGCAGAAAGAGAAGTTCCTAAAACATTTAACAGGGCCTCTCTATTTCAGCCCAAAATGCAGCAAACACTTTTACAGATTATATCATAACACCAGGGACTGCACAATACCAGCCTATTATAGACGATGTGCACGGCTACTCAGAAGATTAGCGGAGAGTCAGCGGTGTTCTGAGGGATAGACGTTGCAGATTTCAACAAACTTAAGAAATAAGGAGGACCAAGAAAAAAGTGCCTTGGAAAagaacagggggaaaaaaacacctcGGACACATATGTCACTATGAAGCATATTTTGTCATCATATTTTTGTCAAACTCCTCCATAGAGTTCTCCATACAGTACCATGGAAGTCTTATTGACTGACAAATCAATGTTGTCACTGAACTTTCTGATAACTCGAATGGTGCAAGTGAAGATGCTGttttacatgatttaaaaaatgccacTGTCAAAATCTGTGGACAGTACAGTGTACTGCAAATACATTTATGCAAATGCTGTTGCTGTTCACTGTGTTTTTCAGTAGTTGTGATCAGAGTATCATTAATTAAACACAGCTTCTAGTCCAAAACTCTTGTCCACCTCTGCTACACAAAATCGAAACCTGTCAAATCAGTGATTGAATTATGAATTGTATTTGTaagacatttcttttggcaGAGATTAGGGATGAAGGAATGctgtgtatgaaaaaaaaaagtcagcattCTCCCTGAATATGAATGTCATATATACTCTATTTATGTATTCAAGTTATTGTCAGTTGCTGGTGTCGAACACACACGCATCCCAGCTAGAGTGCAATATGtacatattgtaaatataagAAAATCTATCTTCAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein FAM150B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934300.2 True 2102 mRNA 0.46 6 18243360 18249232

Neighbor

gene id symbol gene type direction distance location
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 12885 18191959 ~ 18230475 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding downstream 316310 17924721 ~ 17927050 (-)
asap2a asap2 coding downstream 462308 17708618 ~ 17781052 (-)
iah1 iah1 coding downstream 543710 17694780 ~ 17699650 (-)
impg1b LOC108270397 coding downstream 1087718 17135478 ~ 17155642 (-)
c10h1orf115 NA coding upstream 38531 18287763 ~ 18290475 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding upstream 150479 18399711 ~ 18403969 (-)
evla LOC108425620,LOC108270303 coding upstream 166146 18415378 ~ 18437153 (-)
eml1 eml1 coding upstream 210240 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 270665 18519897 ~ 18525899 (-)
G167250 NA non-coding downstream 570587 17669650 ~ 17672773 (-)
G167152 NA non-coding downstream 706585 17536419 ~ 17536775 (-)
LOC117598352 NA non-coding downstream 776586 17452366 ~ 17466774 (-)
G167124 NA non-coding downstream 881204 17361953 ~ 17362156 (-)
G167091 NA non-coding downstream 1105893 17137136 ~ 17137467 (-)
G167572 NA non-coding upstream 22371 18271603 ~ 18271816 (-)
G167577 NA non-coding upstream 45751 18294983 ~ 18296555 (-)
G167579 NA non-coding upstream 52873 18302105 ~ 18303339 (-)
G167580 NA non-coding upstream 67246 18316478 ~ 18316699 (-)
G167617 NA non-coding upstream 149939 18399171 ~ 18399424 (-)
cmpk2 cmpk2 other downstream 618826 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 995537 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1344630 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 2480642 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 2579865 15633002 ~ 15663495 (-)
G167566 apob other upstream 56511 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 126171 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 351063 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 590383 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 712476 18961708 ~ 18966613 (-)

Expression


Co-expression Network