impg1b (LOC108270397)


Basic Information

Item Value
gene id impg1b
gene name LOC108270397
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17135478 ~ 17155642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934331.2
TGGCTTTGActctaaaaaaaacagagacctGCACAATGGCCTTGAAAAAAGGACTATTGCTCACGTTGTTCTTGTTTACCCTCCAAGCCAGCAGAATCAAAGACCTCAGTAGAGACCATTTAACAGGGAAAAGAGACAAGCATTTCTACGAGGCCTTACGAACAGCCAGGCATCTGTCAGCTGTCCAAGATTCATTTATCCTGAATAGGCCTCGAGTGAAGAGATCAGCACTATTCAGTACAGGGGTCAAAGCATGTCCTCAGGAGAACATGGCAGAGATCATCGCCAGCCACAAATCATACTACAAACTGAGAGTCTGCCAGGAAGCTGTATGGGAAGCCTTCCAAATTTTCTTGGACAGAGTACCTGATACTACAGAGTTCCAGCAGTGGGTCCATGCCTGCCAAACAGACTCACTTTGTGTGGAGGACTTGGCCCATAATTTCAGCAGCACCCAGGAACACCTTGACATGGTGGCCAAGAGAGTGAACATTGAAGATAACCAAGAGGAtgccaTGGCCACATCTGTACCAGGCAAGAAATGTTCAGAAATTCCTGAAGAGAAAGTTGCCCTGGATTCTGAAAAGACCAAGGTCTCAGCTGTACAGCACATAATAGAGTTCAGTGTGACTGTGAAGGACCCAGACTACAGGCAGCTACAGAGAGACCCTGACAGTTTGCAATATCAGGATGCCCCCCACAGTCTTCATGAACAGATGCTGCAAATTTTTAACAAACTTCCTGGTTTTAAGGAGATTCGACTGCTGGGAATTCCGAGTCCTGGAAGTGTTGCAGTGCGCTATGCAgtggtgtttgagacagaagTAGACTCTACAGGAATAGGGCCCTCAGGGACAGTTGGAGAATCTGGCACAGAAATAGCCCTGAAGGACATGGTATTAAAGGCCCTGAGGGAGGATACATCCCTGCCTTTGGATATTTGTTCTCTCAGCTTTGAACCAACTacacaaaatcatttaaaagtcCTACCAACAGACAAACCAAGACATCCACCTGGGGTTATTAGTAAGCAAGAAGCAGTGGCCATCTCTGAGGAGACTACTGAGTCAATTAACAACTCAGAGGAAGAAGCAGTTCCTAATGGAACTCAAGGGAGGGATGAGGAGGCAATAGAGAGCACATTTCCTACACAGGAAACATGTAAGCATTTGCCTACTGTAACTACATTGGTGACCATTAGTGAGCCATCTCCACCTGAACCAAGTGGTGGCCCCAAGCTAAAGGAAGCTGAGGAGCAAAATCTAATAACTAAGGTTGAAGGATATAAGAGGAACACTACACTGGATTCCCCATTAAAGGTGTCTGAAGTGGAACAGGCTCTTGGAAATGAAATTGCTGCCATGCCCAGCTCACCGAACTTGAACTCCATTAAAGCTATGAGAGCATCTACTACAAATCAGTATTCAGAGAGGTTAAGTGTTATATCAGAAGCTTCATTTAAAGAAGAAATATACTTTACCCCAACTGAAGTGCCTAAAGCAGAGGACATAGCAGGCGATACCACTGGGGCTATGGATGACATTTCCAAAACTCCTGAGCCCAGCAGTTTTACAGGGAGCTCTGAGGTACCTAGCACAAATGAACCCATGGAGTTAATAAGGTTCTCGTTAGTACCCAGGACTGAAGGTACCATCCAGCATATGCAGTCTGCCTCAATCCCTCAAACTGTACCTTCTGTAGACTTACCCTCTTCACCTCCAGCCCTACCTGGAAATTTCCTTGATAAGGAAGGACAGTCTATCCAAACCCATTCCTCTCATCAGACTAAAGCATGTGACAATCAGGACTTTATTAAGGGCTTGCCATCTGAGACAGACAATCCACAATCCTCAGTCCCCTCTCTAGACAAAGACGTTGGGGTGTTCTTTAGTGTACAGATTACCAACATGCTCTTTTCAGAGGATCTCTTAAATAGGAGCTCACCTGGATATACGTCTCTGGAGAACACATTCCTTGAACTAAGACAAACTTCTGAACCCGGTAACCTGCCAAACCCAGAGTCTTCCAGTAAACAAACTGAGAAGGAACAGCGGACATTAGCTTCAATACCGTTGCTCCAATTTCTACAATCCAATCTAACCGGATTTAAGGAGCTACACATCCTCAACTTCAGAAATGGCAGTGTGGTAGTAAACAACAAGATGAAGTTAGCCAAGCCAGTGGTGGATAATATCACCAAGGCTGTACACGGCACTCTTGATGACTTTAATAATACTGCCTCAAAGAGAACGGATAGTGAAACTGACACCCAGTCAGCTGATCGTGGTGATCCATGCAAGTACATGGATTGTAATGAGTTTTCTCACTGTGTGGTGAACATACTGACCACTGAGGCTGAGTGTCTGTGTGATGCTGGCTACAGCACAGTGGATGGCCTGCCATGTCAGAGCATCTGTAACCTCCAACCCAACTATTGTCTCAATGGGGGACTATGTGAGAACATACCAGGACATGGAGCCAGCTGCAGATGTCCTGCAGGTAAATATTGGTACTATCACGGAGAGCACTGCAGTGAGCTGGTGTCTGTCCCAGTCGACCCATTCCTATTTGTACTCTGTCTGATGGGAAGTCTCACAGTGGTGTGTGCTGTGATAGGCCTGTTAATGTTGATTAACAGGAAGTGTATACGGAccagaaagacagtgagacTAGTGCATTCTCACTCTCCCCTGTCTATGGAGGGAATTATGAGAGTGAATCCAATCTTTGAGAATGATGATGGTATCTTGACTCATGTGTCCAGCACCAGCTCTCCCACAAtcactgactctgactctggCTCATCTCAACCCTCTGACCAGGGCTCATTTTATTCATTGGAAAACATGCACCTTAGCATTGAGATTCCCAGGAAACTGTATACAACAAGGTCAGAAAAGTTAGTATCAGAAATAGTTGGTTTCCACCACTGCATACCACATGTCGAGacatGGAGACTGTCTAATGAACACAGGACATCATGTTGTCTTCTGAGAGGATCTGACAGTGATGGGATTGAAGTGACTGTGTTATGACAATTTCATGGCCAGTCAAAACGTCTGAGCTCAAATTGGCAGCAAAGGTCACTATCGGAGCAATAGGGAGCAGAGAAATCATTGTTTGTGACTTGTAATGTGTCAAGATGTACCCTTGTTAAAGGTTCTTTTTCCCTCACAGTGaggtatttatttacaaatggaTACATTTGGTGGTATCATTATTGCTATAGACTATATTGTTTAGACACTAGTATATCTCCAGTGTCCAAACAGTGTtccattttagtttttttttaaagccatatCAGCTTCTGCATTTTTAATTAGATTCTGATAATGATCTTAGATCTAATAAACTTGTActagaaaaaaaagtctggcTTTTGCAAGGAAACATTTCTCATCGATAATTTGTGCTGACCCCTGATAAAAACATACAGGATAAggattattttactttattatacaCTTTTACAGAGAAgagaacaaaaaataataaaataaaaaaaacagcttccaCACCAATGAATTGCTTGTGTTACAGATCTGACTTGTGGTTTATGTACctcatgaatattttttttttcttcaaatcatCACATTTCCACCAACCAGCAGGTGTAAAATATGCACGCACAGAACAAACATTT
>XM_026934332.2
TGGCTTTGActctaaaaaaaacagagacctGCACAATGGCCTTGAAAAAAGGACTATTGCTCACGTTGTTCTTGTTTACCCTCCAAGCCAGCAGAATCAAAGACCTCAGTAGAGACCATTTAACAGGGAAAAGAGACAAGCATTTCTACGAGGCCTTACGAACAGCCAGGCATCTGTCAGCTGTCCAAGATTCATTTATCCTGAATAGGCCTCGAGTGAAGAGATCAGCACTATTCAGTACAGGGGTCAAAGCATGTCCTCAGGAGAACATGGCAGAGATCATCGCCAGCCACAAATCATACTACAAACTGAGAGTCTGCCAGGAAGCTGTATGGGAAGCCTTCCAAATTTTCTTGGACAGAGTACCTGATACTACAGAGTTCCAGCAGTGGGTCCATGCCTGCCAAACAGACTCACTTTGTGTGGAGGACTTGGCCCATAATTTCAGCAGCACCCAGGAACACCTTGACATGGTGGCCAAGAGAGTGAACATTGAAGATAACCAAGAGGAtgccaTGGCCACATCTGTACCAGGCAAGAAATGTTCAGAAATTCCTGAAGAGAAAGTTGCCCTGGATTCTGAAAAGACCAAGGTCTCAGCTGTACAGCACATAATAGAGTTCAGTGTGACTGTGAAGGACCCAGACTACAGGCAGCTACAGAGAGACCCTGACAGTTTGCAATATCAGGATGCCCCCCACAGTCTTCATGAACAGATGCTGCAAATTTTTAACAAACTTCCTGGTTTTAAGGAGATTCGACTGCTGGGAATTCCGAGTCCTGGAAGTGTTGCAGTGCGCTATGCAgtggtgtttgagacagaagTAGACTCTACAGGAATAGGGCCCTCAGGGACAGTTGGAGAATCTGGCACAGAAATAGCCCTGAAGGACATGGTATTAAAGGCCCTGAGGGAGGATACATCCCTGCCTTTGGATATTTGTTCTCTCAGCTTTGAACCAACTacacaaaatcatttaaaagtcCTACCAACAGACAAACCAAGACATCCACCTGGGGTTATTAGTAAGCAAGAAGCAGTGGCCATCTCTGAGGAGACTACTGAGTCAATTAACAACTCAGAGGAAGAAGCAGTTCCTAATGGAACTCAAGGGAGGGATGAGGAGGCAATAGAGAGCACATTTCCTACACAGGAAACATGTAAGCATTTGCCTACTGTAACTACATTGGTGACCATTAGTGAGCCATCTCCACCTGAACCAAGTGGTGGCCCCAAGCTAAAGGAAGCTGAGGAGCAAAATCTAATAACTAAGGTTGAAGGATATAAGAGGAACACTACACTGGATTCCCCATTAAAGGTGTCTGAAGTGGAACAGGCTCTTGGAAATGAAATTGCTGCCATGCCCAGCTCACCGAACTTGAACTCCATTAAAGCTATGAGAGCATCTACTACAAATCAGTATTCAGAGAGGTTAAGTGTTATATCAGAAGCTTCATTTAAAGAAGAAATATACTTTACCCCAACTGAAGTGCCTAAAGCAGAGGACATAGCAGGCGATACCACTGGGGCTATGGATGACATTTCCAAAACTCCTGAGCCCAGCAGTTTTACAGGGAGCTCTGAGGTACCTAGCACAAATGAACCCATGGAGTTAATAAGGTTCTCGTTAGTACCCAGGACTGAAGGTACCATCCAGCATATGCAGTCTGCCTCAATCCCTCAAACTGTACCTTCTGTAGACTTACCCTCTTCACCTCCAGCCCTACCTGGAAATTTCCTTGATAAGGAAGGACAGTCTATCCAAACCCATTCCTCTCATCAGACTAAAGCATGTGACAATCAGGACTTTATTAAGGGCTTGCCATCTGAGACAGACAATCCACAATCCTCAGTCCCCTCTCTAGACAAAGACGTTGGGGTGTTCTTTAGTGTACAGATTACCAACATGCTCTTTTCAGAGGATCTCTTAAATAGGAGCTCACCTGGATATACGTCTCTGGAGAACACATTCCTTGAACTATTGCTCCAATTTCTACAATCCAATCTAACCGGATTTAAGGAGCTACACATCCTCAACTTCAGAAATGGCAGTGTGGTAGTAAACAACAAGATGAAGTTAGCCAAGCCAGTGGTGGATAATATCACCAAGGCTGTACACGGCACTCTTGATGACTTTAATAATACTGCCTCAAAGAGAACGGATAGTGAAACTGACACCCAGTCAGCTGATCGTGGTGATCCATGCAAGTACATGGATTGTAATGAGTTTTCTCACTGTGTGGTGAACATACTGACCACTGAGGCTGAGTGTCTGTGTGATGCTGGCTACAGCACAGTGGATGGCCTGCCATGTCAGAGCATCTGTAACCTCCAACCCAACTATTGTCTCAATGGGGGACTATGTGAGAACATACCAGGACATGGAGCCAGCTGCAGATGTCCTGCAGGTAAATATTGGTACTATCACGGAGAGCACTGCAGTGAGCTGGTGTCTGTCCCAGTCGACCCATTCCTATTTGTACTCTGTCTGATGGGAAGTCTCACAGTGGTGTGTGCTGTGATAGGCCTGTTAATGTTGATTAACAGGAAGTGTATACGGAccagaaagacagtgagacTAGTGCATTCTCACTCTCCCCTGTCTATGGAGGGAATTATGAGAGTGAATCCAATCTTTGAGAATGATGATGGTATCTTGACTCATGTGTCCAGCACCAGCTCTCCCACAAtcactgactctgactctggCTCATCTCAACCCTCTGACCAGGGCTCATTTTATTCATTGGAAAACATGCACCTTAGCATTGAGATTCCCAGGAAACTGTATACAACAAGGTCAGAAAAGTTAGTATCAGAAATAGTTGGTTTCCACCACTGCATACCACATGTCGAGacatGGAGACTGTCTAATGAACACAGGACATCATGTTGTCTTCTGAGAGGATCTGACAGTGATGGGATTGAAGTGACTGTGTTATGACAATTTCATGGCCAGTCAAAACGTCTGAGCTCAAATTGGCAGCAAAGGTCACTATCGGAGCAATAGGGAGCAGAGAAATCATTGTTTGTGACTTGTAATGTGTCAAGATGTACCCTTGTTAAAGGTTCTTTTTCCCTCACAGTGaggtatttatttacaaatggaTACATTTGGTGGTATCATTATTGCTATAGACTATATTGTTTAGACACTAGTATATCTCCAGTGTCCAAACAGTGTtccattttagtttttttttaaagccatatCAGCTTCTGCATTTTTAATTAGATTCTGATAATGATCTTAGATCTAATAAACTTGTActagaaaaaaaagtctggcTTTTGCAAGGAAACATTTCTCATCGATAATTTGTGCTGACCCCTGATAAAAACATACAGGATAAggattattttactttattatacaCTTTTACAGAGAAgagaacaaaaaataataaaataaaaaaaacagcttccaCACCAATGAATTGCTTGTGTTACAGATCTGACTTGTGGTTTATGTACctcatgaatattttttttttcttcaaatcatCACATTTCCACCAACCAGCAGGTGTAAAATATGCACGCACAGAACAAACATTT

Function

NR:

description
interphotoreceptor matrix proteoglycan 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934331.2 True 3649 mRNA 0.43 17 17135478 17155642
XM_026934332.2 False 3559 mRNA 0.43 16 17135478 17155642

Neighbor

gene id symbol gene type direction distance location
slc30a1b LOC108269644,LOC105895753 coding downstream 182181 16940627 ~ 16953297 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding downstream 198039 16928845 ~ 16937439 (-)
tmem62 tmem62,LOC103132791 coding downstream 213431 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 324262 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 359902 16761588 ~ 16775576 (-)
iah1 iah1 coding upstream 539138 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 552976 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 769079 17924721 ~ 17927050 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding upstream 1036317 18191959 ~ 18230475 (-)
alkal2b LOC108425626 coding upstream 1087718 18243360 ~ 18249232 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding downstream 9890 17124505 ~ 17125588 (-)
LOC117598293 NA non-coding downstream 46702 17076982 ~ 17088776 (-)
G167007 NA non-coding downstream 79930 17052484 ~ 17055548 (-)
G167011 NA non-coding downstream 165513 16967456 ~ 16969965 (-)
G166967 NA non-coding downstream 207282 16925276 ~ 16928196 (-)
G167124 NA non-coding upstream 206311 17361953 ~ 17362156 (-)
LOC117598352 NA non-coding upstream 296724 17452366 ~ 17466774 (-)
G167152 NA non-coding upstream 380777 17536419 ~ 17536775 (-)
G167250 NA non-coding upstream 514008 17669650 ~ 17672773 (-)
G167572 NA non-coding upstream 1115961 18271603 ~ 18271816 (-)
mideasb elmsan1 other downstream 236748 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1372760 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1471983 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1813427 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 2018114 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 11226 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 460096 17615738 ~ 17624534 (-)
G167566 apob other upstream 1150101 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1219761 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1444653 18600295 ~ 18642889 (-)

Expression


Co-expression Network