hadhab (hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738)


Basic Information

Item Value
gene id hadhab
gene name hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16928845 ~ 16937439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934436.2
GCAGCAATCCTTGCGCTTTTTATTCTCACTTCCGGTTGTCAGCATTGACCTCCCAAGATGGCGGCGATACGAGCTCTAGGTGTCCTGTCCAGACTTACAGTCAGGGGAAGATATACACTGCTTTCAGGTGCGTCTGGAAGAAGCTTCAGTGTTGTTCCCTGCTTAATGGCTCGTACGCATGTCAACTATGAGGTCAAGGGAGATGTGGCTGTTATTCGCATCAACGACCCAAATTCTAAGGTGAACACGCTATCAGTTACAATGCAAAAGGAGCTGACAGAAGTTATTGATGAGATTTGGGCGGACAACACAGTCAGAAGCGCTGTACTGATCTCCTCTAAGCCTGGCTGCTTCATTGCAGGAGCAGATATCAACATGATACAGGCATGTAAGAGTGCAGAGGAAGTAAGCAAACTCTCTCAGGAGGGGCAGAAGATGTTTGAGAAAATTGAGAATTCTCCAAAACCAATTGTTGCTGCCATCAATGGATCATGTCTTGGTGGAGGACTAGAGTTTGCCATCGCCTGCCAGTACAGAGTGGCCACAAAGAGTAAGAAGACAGTTCTGGGCACTCCTGAGGTCATGCTGGGTCTTCTTCCTGGTGCTGGAGGAACACAGAGGCTTCCCAAAATGgttGGGCTACCCAGTGCCTTTGACATGATGCTAACAGGAAGGAATATTCGTGCAGATAAAGCCAAGAAAATGGGGCTCATTCACCAACTGGTTGACCCACTTGGCCCTGGATtgaagaacccagaggagaGAACCATTGAATACTTGGAAGAAGTAGCGGTAGACTGTGCCCGTGGAATTGCTGACAAGAGAATCCCACTCACTAAAGAAAAGGGTGTGATGCAAAAAATACAAGACTACGTTATGAGCTTTGGGTTTGTGCGTAATCAAATCTACAACACTGTGCAGAACAAGGTCATGAATCAGACAAAAGGGCTATATCCTGCTCCTGTGAAAATCATTGAGACTGTGAAGACTGGCATAGAGCAGGGCTTAGATGCAGGATACCTGGCAGAGTCTCAGAACTTTGGCAAATTAGCAATGACCCCAGAATCCAATGCACTTATTGGACTTTATCATGGCCAAGTTGCTTGCAAGAAGAACCGATTTGGAACCCCTGAAAAGGAGGTTAAAACCCTGGCCATCTTGGGAGCAGGGCTGATGGGGGCAGGAATTGGCCAGGTCTCTGTGGACAAAGGCATTAATACCATTCTTAAGGACACCACTCTGGAGGGACTTAATCGAGGGCAGCAGCAGGTTTACAAAGGATTAAATGATAAGACAAAGAAGAAGAGCATTACCTCATTTGAAAGGGACAACATACTATCCAACCTCACAGGACAGCTAGACTACAGTGGCTTCCAGAAGGCTGACATGGTCATTGAAGCTGTATTTGAGGATATCGCCATTAAACACAAAGTCATAAATGAAGTCGAAGCTGTCATTCCTCCTCATTGTATATTTGCCTCAAACACATCAGCTCTCCCAATCAAAGACATCGCAGCTGCCAGTAAACGACCAGAAAAGGTAATTGGAATGCATTACTTTTCTCCAGTGGACAAGATGCAGCTTCTGGAGATCATAACTACTGATAAAACCTCTAAGGACACCACTGCCTCTGCTGTAGCAGTGGGCCTGAAGCAAGGCAAAGTCATTATTGTGGTTGGGGATGGACCTGGGTTTTATACCACCAGGTGCTTAGCTCCCATGTTAGCAGAAGCAGTCAGAGTACTGcagGAAGGCGTGGACCCCAAGAAGCTGGATTCTCTGACTACAGGGTTTGGCTTCCCAGTGGGTGCTGCTACTCTGGCTGATGAAGTGGGTATCGATGTCGCCGCTCATGTGGCCGAGGACCTGGGCAAAGCTTTCGGCTCAAGATTTGGTGGAGGAAATCCTGAGCTGCTGAAAACAATGGTGGAGAAAGGATTCAAAGGCCGGAAGTCTGGTAAAGGGTGCTATGTTTACCAACCTGGACTTAAACGCAAAGACGTCAACCCAGAAATAGGGGACATTCTGGAGCAGTACAAGATAACTGCAAACCCTTCAGTGTCGTCAGACTCGGACGTGCAGTACAGACTGGTGTCTCGCTTTGTGAACGAGGCTGTGCTGTGCCTACAGGAGGGCATCCTCACCAATCCAGTGGAGGGCGACATTGGCGCAGTGTTTGGCCTTGGCTTCCCCCCATGCCTTGGAGGTCCCTTCCGCTTTGTGGACAGCTTCGGTGCAGACAAATTGGTGGAGAAGATGAGACGGTTCGAGGAGGTGTACGGAAACCAGTTTACTCCATGCGCACTTTTACTTGAACATGCCAAGGATCCAAGCAAAAAATTTCACAAGTGACCTTGTCAAGATGTGCCAACAATGAATTCTTTCTTGTAAACAGAAAACCTGCTGCACTTAGAGGTCACAATGTGTTAATTATGTAAAAGACCTCtttttgttaataaaacattaaatacatgATGTGACCATGAGTaatattaaagtaatatttttactgAATTAAA

Function

symbol description
hadha Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Involved in cardiolipin acyl-chain remodeling. Located in mitochondrial nucleoid. Implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Biomarker of Alzheimer's disease.

NR:

description
trifunctional enzyme subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934436.2 True 2519 mRNA 0.47 20 16928845 16937439

Neighbor

gene id symbol gene type direction distance location
tmem62 tmem62,LOC103132791 coding downstream 6798 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 117629 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 153269 16761588 ~ 16775576 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 271475 16626955 ~ 16657370 (-)
slc25a21 slc25a21,LOC107679800 coding downstream 308444 16540840 ~ 16620401 (-)
slc30a1b LOC108269644,LOC105895753 coding upstream 3188 16940627 ~ 16953297 (-)
impg1b LOC108270397 coding upstream 198039 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 757341 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 771179 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 987282 17924721 ~ 17927050 (-)
G166967 NA non-coding downstream 649 16925276 ~ 16928196 (-)
LOC113538645 NA non-coding downstream 63418 16839081 ~ 16865427 (-)
G166865 NA non-coding downstream 184023 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 482840 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 661330 16267229 ~ 16267515 (-)
G167011 NA non-coding upstream 30017 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 115045 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 139543 17076982 ~ 17088776 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 187066 17124505 ~ 17125588 (-)
G167091 NA non-coding upstream 199697 17137136 ~ 17137467 (-)
mideasb elmsan1 other downstream 30115 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1166127 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1265350 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1606794 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1811481 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 229429 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 678299 17615738 ~ 17624534 (-)
G167566 apob other upstream 1368304 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1437964 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1662856 18600295 ~ 18642889 (-)

Expression


Co-expression Network