msh4 (msh4)


Basic Information

Item Value
gene id msh4
gene name msh4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15665480 ~ 15679210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933730.2
GGCGCTAAACCAAACACCTCACGATCTCTTGAACGGGACCAAATACTTCACTGGCTGCTAATTGTTAACGTCACTCGTACAGTTACACTATTTTTGCTGCTTTCCGTCAAGTAAGTCAGTCAGACGAAGTACTGCGGATGTCTAAATGCTCCGTAGCAGCACTGAAGAGGTAACGGCCGGATACAGTTCAGACACCGGCGCAAGCAGCTTGTCCGGTTCTGAGCGCAGCTTCAGCGCAGCTCCGCGCAGGCGGCAGGACGATGGCGCACCGTCCCCGTCTCCTCTGTccagctcacacacaccacacagcgcTAGCTCCTGCTCCGGTCCTGGATCAACCTCCACCTCTGTAGCTGGTGTTCAGACAACAAGCGTAACCAAAACTCCGGCTACAACAGgtgtgaaCAGGGTGAACTCGTCCAGCTCTTCATGGACTGGTGGTGGGGTCTACAGTTCTCTGTGCAGAAGCTCAAGCACTCCTCGCCTCAGGAGAACACCAGGCTCAGCTACGCGCACCCTGCTGGGACCAGCTCTACAGAGGGAGCTCAACATGACATCTTCCTCGTCTGCATCTGTGTGTCATGCTGCATCTGTAATCGTGGCTGTGGTGGAGGGCCGGGGTTTAGCCAGGGGAGAGATCGGCATGGCCAGCATCAACACGAGGTCCCCTGAGTTGGTACTCTCACAGTTTGCAGATACTGGGACTTATGCCAAGGTAATTACCAAACTGCATATCTTAGTGCCTCTTGAGATTCTCATGCCAGACACTGCTAGTGAGAAAGGGCAAGGAACCAAGCTCTACAACCTCATCACAGAGAACTTTTCGTCTGTAGCTTTCACTGCAATTCAAAGGAAGTACTTTAACGAGGGGAAAGGACTGGAGTATATCCAGCAGCTCTGTGCGCCCGAGTTCAACACTGTTCTAATGGATGTACACACCAAGTACTATTGTCTGGCAGCTGCAGCAGCGCTCCTTAAGTACTTAGAGTTCATTCAGAACTCTGTCTATGCTCCCAGATCTCTGAAAGTGAGCTTCACCGGCAGTGAGCAGACTGCCATGATTGACGCAGTCTCAGCCAGGAACTTGGAGTTAGTAATTAACAACAGGGGCCACAGGAGTGAACACACTCTACTTGAGGTcttaaattacacaaaaacaccTGGTGGTGAGAGGAGGCTTCGCTCTAACATTCTGGAGCCTCTGTTGGATGTTGACACCATTAACACACGACAGGACACCATACAGGAACTGCTGCAGGGTGAGGAACTCTTCTTTGGTCTCAAGAGTGCAATCACACAATTCTTGGATATAGATCAACTGCTTTCTGCTCTTGTGCAGCTCCCCAAGCAAGAGACGGTTGAAGTGGCTGAAGCAAAGATAATGCAGGTCATTCAGCTGAAACACACGCTAGAGCTGATTGAACCACTCAAGATGGTGTTGAAGGACGCTAAGACATCCTTACTGAAAGCTTATTACACTTCACTAGAAGATAGCAGGTTTAACAGCATTTTGGATCAAATCAAAACAGTGATCAACAATGACACCAGCTATATGAAGGGCAGTCTGAATATGCGCACACAAAAGTGCTATGCTGTACGCCCTAATGTCAATGAATTGCTAGACATTGCACGTCGAGCCTACACTGAGGTAGTGGATGATATAGCAGGATTAGTAGATCAGCTAGGAGAGAAGTATGGCCTTCCACTGCGCACTAGTTTTAACACTGCTCGAGGTTTCTTCATCCAGATGAGGCTGGAGGGTTTTGGCCTGCCTGATGGACAGCTTCCAGGAGAGTTCATCAAAGTAActagacaaaaaaacaactacagCTTCACTACGTTAGACctgatgaagatgaatgatcGCTGTGATGAAGCCTTGAAGGAGATATTTCACATGTCTTACATTGTGGTGTGCAGGTTACTTAATGAGGTGTATAAACACATTCACTGCTTGTATAAGCTCTCTGATGCTGTATCCATGCTGGATATGCTGCTCTCCCTCGCCAATGTTTGCACTATTTCAGACTATGTGCGCCCTGAATTCACTGATACACTGGCAATAAGACAAGGCCGCCATCCGATTCTGGAGCGCGTTGCTGGCCAGCAGCCCATCCCCAACAACAGCCATATCTCTGAGGGAAGCAACTTTGTTATAATCACAGGCCCGAACATGAGTGGCAAGTCCACTTACCTCAAACAGGTGGCCCTCTGCCAAATCATGGCTCAGATAGGATCATTTGTGCCTGCTGAATTTGCCTCGTTCCGTATTGCTGATCAAATATTCACTCGGATAGGAGTAGACGACGATTTTGAGACCAACTCATCAACATTTATGGTTGAGATGAAGGAGGTGTCCTACATAATACACAATGCAAGTAACAGGTCACTCATTATTATTGATGAGCTGGGACGTGGCACTAGTGCAGAGGAGGGCATCGGAATTTGCCACTCGGTTTGTGAATTCCTCATCAATCTGAAGGCATTCACTCTGTTTGCCACCCACTTCCTGGAGCTGTGTCAGTTGGAGAGTCTTTACCCCAACGTAGAGAATCAGCACATGCAGGTCCAGCACATGCGTGGGACTGAAAACAGCGCAGAGAGTGTGGTCTACACCTACCTGCTGACTCAAGGCTTCTCTGAGGAAAGCAACTATGGTATAAGAGCAGCAGAGAACACCTCATTTCCACTGTCCATCATCCAGGAGGCCAAGGCTATATCAGCCAAAGTTAGCCAAAAGTTATGGGCTAAGCATCATAGCGACCCAACCACCCTGCGACAAGGGGCAGCGTTTCGTCTCGCCACCAGATTGTTACAGACGGCCCGAAACTCCAGGTTGGATCCAGATAGTCTCTGTCTTTACCTAAAGGGCCTAAAAAGAAGCTATGAAGCTGAGTTAAAGGACAGCTTAGAGTCCATGGACACAGAGGAGTGATGCCTGCTGCACCTAGACTAACAGAAATGGACTGGATGCTAAGATCTTAGCAAGCGCACACTGAGTAAATCCAGTATCACAACTGGTGACTGAATTAGTTGGgttaatggaaatatttaataaatttgcgCAGATATTGTTATGATTTTGTTCTCTGGTGGTACAAAGACAATTAAAAATGCTCTGTTGAGTTATCCTCTACAGCATGTTGAGTAGTAAATGCTAAATCTAATTGGAAACTATATATGGCTTTCCTACTAAATAGAATtgactaaataaaatatattttgtttagttgATTTTAGTTATTGCTAACACTGTCCCAGCTTTAACTGTATTGTAGTGTGTTGAAATGTAAACTAGAGGTCATTAAAAAACGCAAATGCA
>XM_026933732.2
GGCGCTAAACCAAACACCTCACGATCTCTTGAACGGGACCAAATACTTCACTGGCTGCTAATTGTTAACGTCACTCGTACAGTTACACTATTTTTGCTGCTTTCCGTCAAGTAAGTCAGTCAGACGAAGTACTGCGGATGTCTAAATGCTCCGTAGCAGCACTGAAGAGGTAACGGCCGGATACAGTTCAGACACCGGCGCAAGCAGCTTGTCCGGTTCTGAGCGCAGCTTCAGCGCAGCTCCGCGCAGGCGGCAGGACGATGGCGCACCGTCCCCGTCTCCTCTGTccagctcacacacaccacacagcgcTAGCTCCTGCTCCGGTCCTGGATCAACCTCCACCTCTGTAGCTGGTGTTCAGACAACAAGCGTAACCAAAACTCCGGCTACAACAGgtgtgaaCAGGGTGAACTCGTCCAGCTCTTCATGGACTGGTGGTGGGGTCTACAGTTCTCTGTGCAGAAGCTCAAGCACTCCTCGCCTCAGGAGAACACCAGGCTCAGCTACGCGCACCCTGCTGGGACCAGCTCTACAGAGGGAGCTCAACATGACATCTTCCTCGTCTGCATCTGTGTGTCATGCTGCATCTGTAATCGTGGCTGTGGTGGAGGGCCGGGGTTTAGCCAGGGGAGAGATCGGCATGGCCAGCATCAACACGAGGTCCCCTGAGTTGGTACTCTCACAGTTTGCAGATACTGGGACTTATGCCAAGTCTGTAGCTTTCACTGCAATTCAAAGGAAGTACTTTAACGAGGGGAAAGGACTGGAGTATATCCAGCAGCTCTGTGCGCCCGAGTTCAACACTGTTCTAATGGATGTACACACCAAGTACTATTGTCTGGCAGCTGCAGCAGCGCTCCTTAAGTACTTAGAGTTCATTCAGAACTCTGTCTATGCTCCCAGATCTCTGAAAGTGAGCTTCACCGGCAGTGAGCAGACTGCCATGATTGACGCAGTCTCAGCCAGGAACTTGGAGTTAGTAATTAACAACAGGGGCCACAGGAGTGAACACACTCTACTTGAGGTcttaaattacacaaaaacaccTGGTGGTGAGAGGAGGCTTCGCTCTAACATTCTGGAGCCTCTGTTGGATGTTGACACCATTAACACACGACAGGACACCATACAGGAACTGCTGCAGGGTGAGGAACTCTTCTTTGGTCTCAAGAGTGCAATCACACAATTCTTGGATATAGATCAACTGCTTTCTGCTCTTGTGCAGCTCCCCAAGCAAGAGACGGTTGAAGTGGCTGAAGCAAAGATAATGCAGGTCATTCAGCTGAAACACACGCTAGAGCTGATTGAACCACTCAAGATGGTGTTGAAGGACGCTAAGACATCCTTACTGAAAGCTTATTACACTTCACTAGAAGATAGCAGGTTTAACAGCATTTTGGATCAAATCAAAACAGTGATCAACAATGACACCAGCTATATGAAGGGCAGTCTGAATATGCGCACACAAAAGTGCTATGCTGTACGCCCTAATGTCAATGAATTGCTAGACATTGCACGTCGAGCCTACACTGAGGTAGTGGATGATATAGCAGGATTAGTAGATCAGCTAGGAGAGAAGTATGGCCTTCCACTGCGCACTAGTTTTAACACTGCTCGAGGTTTCTTCATCCAGATGAGGCTGGAGGGTTTTGGCCTGCCTGATGGACAGCTTCCAGGAGAGTTCATCAAAGTAActagacaaaaaaacaactacagCTTCACTACGTTAGACctgatgaagatgaatgatcGCTGTGATGAAGCCTTGAAGGAGATATTTCACATGTCTTACATTGTGGTGTGCAGGTTACTTAATGAGGTGTATAAACACATTCACTGCTTGTATAAGCTCTCTGATGCTGTATCCATGCTGGATATGCTGCTCTCCCTCGCCAATGTTTGCACTATTTCAGACTATGTGCGCCCTGAATTCACTGATACACTGGCAATAAGACAAGGCCGCCATCCGATTCTGGAGCGCGTTGCTGGCCAGCAGCCCATCCCCAACAACAGCCATATCTCTGAGGGAAGCAACTTTGTTATAATCACAGGCCCGAACATGAGTGGCAAGTCCACTTACCTCAAACAGGTGGCCCTCTGCCAAATCATGGCTCAGATAGGATCATTTGTGCCTGCTGAATTTGCCTCGTTCCGTATTGCTGATCAAATATTCACTCGGATAGGAGTAGACGACGATTTTGAGACCAACTCATCAACATTTATGGTTGAGATGAAGGAGGTGTCCTACATAATACACAATGCAAGTAACAGGTCACTCATTATTATTGATGAGCTGGGACGTGGCACTAGTGCAGAGGAGGGCATCGGAATTTGCCACTCGGTTTGTGAATTCCTCATCAATCTGAAGGCATTCACTCTGTTTGCCACCCACTTCCTGGAGCTGTGTCAGTTGGAGAGTCTTTACCCCAACGTAGAGAATCAGCACATGCAGGTCCAGCACATGCGTGGGACTGAAAACAGCGCAGAGAGTGTGGTCTACACCTACCTGCTGACTCAAGGCTTCTCTGAGGAAAGCAACTATGGTATAAGAGCAGCAGAGAACACCTCATTTCCACTGTCCATCATCCAGGAGGCCAAGGCTATATCAGCCAAAGTTAGCCAAAAGTTATGGGCTAAGCATCATAGCGACCCAACCACCCTGCGACAAGGGGCAGCGTTTCGTCTCGCCACCAGATTGTTACAGACGGCCCGAAACTCCAGGTTGGATCCAGATAGTCTCTGTCTTTACCTAAAGGGCCTAAAAAGAAGCTATGAAGCTGAGTTAAAGGACAGCTTAGAGTCCATGGACACAGAGGAGTGATGCCTGCTGCACCTAGACTAACAGAAATGGACTGGATGCTAAGATCTTAGCAAGCGCACACTGAGTAAATCCAGTATCACAACTGGTGACTGAATTAGTTGGgttaatggaaatatttaataaatttgcgCAGATATTGTTATGATTTTGTTCTCTGGTGGTACAAAGACAATTAAAAATGCTCTGTTGAGTTATCCTCTACAGCATGTTGAGTAGTAAATGCTAAATCTAATTGGAAACTATATATGGCTTTCCTACTAAATAGAATtgactaaataaaatatattttgtttagttgATTTTAGTTATTGCTAACACTGTCCCAGCTTTAACTGTATTGTAGTGTGTTGAAATGTAAACTAGAGGTCATTAAAAAACGCAAATGCA

Function

symbol description
msh4 Predicted to enable ATPase, acting on DNA. Predicted to be involved in meiotic mismatch repair and resolution of meiotic recombination intermediates. Predicted to act upstream of or within mismatch repair. Predicted to be active in synaptonemal complex. Orthologous to human MSH4 (mutS homolog 4).

NR:

description
mutS protein homolog 4 isoform X2

GO: NA

KEGG:

id description
K08740 MSH4; DNA mismatch repair protein MSH4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933730.2 True 3322 mRNA 0.47 21 15665480 15679210
XM_026933732.2 False 3211 mRNA 0.47 20 15665480 15679210

Neighbor

gene id symbol gene type direction distance location
peli2 peli2,LOC108270353,LOC103028664,LOC108435764,LOC107586838,LOC107664501,LOC107668538,LOC107561697 coding downstream 40297 15608765 ~ 15625183 (-)
tmem260 tmem260 coding downstream 123354 15513379 ~ 15542126 (-)
ap5m1 ap5m1 coding downstream 253727 15407340 ~ 15411753 (-)
naa30 naa30,LOC108270341,LOC108258186 coding downstream 260784 15398852 ~ 15404696 (-)
tmem63c tmem63c,LOC107732232 coding downstream 370812 15263327 ~ 15294668 (-)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 1711 15680921 ~ 15702721 (-)
LOC113538816 npc2 coding upstream 27415 15706625 ~ 15710744 (-)
itpk1b itpk1,itpk1b,LOC108435758,LOC107561681,LOC107664466,LOC107703450 coding upstream 84648 15763858 ~ 15799664 (-)
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding upstream 123029 15802239 ~ 15808833 (-)
hspa4l hspa4l,LOC107586823,LOC107561683,LOC107718856 coding upstream 132132 15811342 ~ 15823965 (-)
G166286 NA non-coding downstream 57958 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 174472 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 419571 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 420017 15244866 ~ 15245463 (-)
G165949 fam161b non-coding downstream 420982 15244285 ~ 15244498 (-)
G166319 NA non-coding upstream 216457 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 253947 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 321009 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 588019 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 765631 16444841 ~ 16446005 (-)
ktn1 ktn1,LOC107668535 other downstream 1985 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 343429 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 548116 15107120 ~ 15117364 (-)
nenf nenf other downstream 583275 15079696 ~ 15082205 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other downstream 892599 14727133 ~ 14772881 (-)
eml5 eml5,LOC108435760 other upstream 36350 15715560 ~ 15762718 (-)
mideasb elmsan1 other upstream 1194069 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1487658 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1936528 17615738 ~ 17624534 (-)
G167566 apob other upstream 2626533 18305743 ~ 18316207 (-)

Expression


Co-expression Network