RNA id: XM_026933732.2


Basic Information

Item Value
RNA id XM_026933732.2
length 3211
RNA type mRNA
GC content 0.47
exon number 20
gene id msh4
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15665480 ~ 15679210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCTAAACCAAACACCTCACGATCTCTTGAACGGGACCAAATACTTCACTGGCTGCTAATTGTTAACGTCACTCGTACAGTTACACTATTTTTGCTGCTTTCCGTCAAGTAAGTCAGTCAGACGAAGTACTGCGGATGTCTAAATGCTCCGTAGCAGCACTGAAGAGGTAACGGCCGGATACAGTTCAGACACCGGCGCAAGCAGCTTGTCCGGTTCTGAGCGCAGCTTCAGCGCAGCTCCGCGCAGGCGGCAGGACGATGGCGCACCGTCCCCGTCTCCTCTGTccagctcacacacaccacacagcgcTAGCTCCTGCTCCGGTCCTGGATCAACCTCCACCTCTGTAGCTGGTGTTCAGACAACAAGCGTAACCAAAACTCCGGCTACAACAGgtgtgaaCAGGGTGAACTCGTCCAGCTCTTCATGGACTGGTGGTGGGGTCTACAGTTCTCTGTGCAGAAGCTCAAGCACTCCTCGCCTCAGGAGAACACCAGGCTCAGCTACGCGCACCCTGCTGGGACCAGCTCTACAGAGGGAGCTCAACATGACATCTTCCTCGTCTGCATCTGTGTGTCATGCTGCATCTGTAATCGTGGCTGTGGTGGAGGGCCGGGGTTTAGCCAGGGGAGAGATCGGCATGGCCAGCATCAACACGAGGTCCCCTGAGTTGGTACTCTCACAGTTTGCAGATACTGGGACTTATGCCAAGTCTGTAGCTTTCACTGCAATTCAAAGGAAGTACTTTAACGAGGGGAAAGGACTGGAGTATATCCAGCAGCTCTGTGCGCCCGAGTTCAACACTGTTCTAATGGATGTACACACCAAGTACTATTGTCTGGCAGCTGCAGCAGCGCTCCTTAAGTACTTAGAGTTCATTCAGAACTCTGTCTATGCTCCCAGATCTCTGAAAGTGAGCTTCACCGGCAGTGAGCAGACTGCCATGATTGACGCAGTCTCAGCCAGGAACTTGGAGTTAGTAATTAACAACAGGGGCCACAGGAGTGAACACACTCTACTTGAGGTcttaaattacacaaaaacaccTGGTGGTGAGAGGAGGCTTCGCTCTAACATTCTGGAGCCTCTGTTGGATGTTGACACCATTAACACACGACAGGACACCATACAGGAACTGCTGCAGGGTGAGGAACTCTTCTTTGGTCTCAAGAGTGCAATCACACAATTCTTGGATATAGATCAACTGCTTTCTGCTCTTGTGCAGCTCCCCAAGCAAGAGACGGTTGAAGTGGCTGAAGCAAAGATAATGCAGGTCATTCAGCTGAAACACACGCTAGAGCTGATTGAACCACTCAAGATGGTGTTGAAGGACGCTAAGACATCCTTACTGAAAGCTTATTACACTTCACTAGAAGATAGCAGGTTTAACAGCATTTTGGATCAAATCAAAACAGTGATCAACAATGACACCAGCTATATGAAGGGCAGTCTGAATATGCGCACACAAAAGTGCTATGCTGTACGCCCTAATGTCAATGAATTGCTAGACATTGCACGTCGAGCCTACACTGAGGTAGTGGATGATATAGCAGGATTAGTAGATCAGCTAGGAGAGAAGTATGGCCTTCCACTGCGCACTAGTTTTAACACTGCTCGAGGTTTCTTCATCCAGATGAGGCTGGAGGGTTTTGGCCTGCCTGATGGACAGCTTCCAGGAGAGTTCATCAAAGTAActagacaaaaaaacaactacagCTTCACTACGTTAGACctgatgaagatgaatgatcGCTGTGATGAAGCCTTGAAGGAGATATTTCACATGTCTTACATTGTGGTGTGCAGGTTACTTAATGAGGTGTATAAACACATTCACTGCTTGTATAAGCTCTCTGATGCTGTATCCATGCTGGATATGCTGCTCTCCCTCGCCAATGTTTGCACTATTTCAGACTATGTGCGCCCTGAATTCACTGATACACTGGCAATAAGACAAGGCCGCCATCCGATTCTGGAGCGCGTTGCTGGCCAGCAGCCCATCCCCAACAACAGCCATATCTCTGAGGGAAGCAACTTTGTTATAATCACAGGCCCGAACATGAGTGGCAAGTCCACTTACCTCAAACAGGTGGCCCTCTGCCAAATCATGGCTCAGATAGGATCATTTGTGCCTGCTGAATTTGCCTCGTTCCGTATTGCTGATCAAATATTCACTCGGATAGGAGTAGACGACGATTTTGAGACCAACTCATCAACATTTATGGTTGAGATGAAGGAGGTGTCCTACATAATACACAATGCAAGTAACAGGTCACTCATTATTATTGATGAGCTGGGACGTGGCACTAGTGCAGAGGAGGGCATCGGAATTTGCCACTCGGTTTGTGAATTCCTCATCAATCTGAAGGCATTCACTCTGTTTGCCACCCACTTCCTGGAGCTGTGTCAGTTGGAGAGTCTTTACCCCAACGTAGAGAATCAGCACATGCAGGTCCAGCACATGCGTGGGACTGAAAACAGCGCAGAGAGTGTGGTCTACACCTACCTGCTGACTCAAGGCTTCTCTGAGGAAAGCAACTATGGTATAAGAGCAGCAGAGAACACCTCATTTCCACTGTCCATCATCCAGGAGGCCAAGGCTATATCAGCCAAAGTTAGCCAAAAGTTATGGGCTAAGCATCATAGCGACCCAACCACCCTGCGACAAGGGGCAGCGTTTCGTCTCGCCACCAGATTGTTACAGACGGCCCGAAACTCCAGGTTGGATCCAGATAGTCTCTGTCTTTACCTAAAGGGCCTAAAAAGAAGCTATGAAGCTGAGTTAAAGGACAGCTTAGAGTCCATGGACACAGAGGAGTGATGCCTGCTGCACCTAGACTAACAGAAATGGACTGGATGCTAAGATCTTAGCAAGCGCACACTGAGTAAATCCAGTATCACAACTGGTGACTGAATTAGTTGGgttaatggaaatatttaataaatttgcgCAGATATTGTTATGATTTTGTTCTCTGGTGGTACAAAGACAATTAAAAATGCTCTGTTGAGTTATCCTCTACAGCATGTTGAGTAGTAAATGCTAAATCTAATTGGAAACTATATATGGCTTTCCTACTAAATAGAATtgactaaataaaatatattttgtttagttgATTTTAGTTATTGCTAACACTGTCCCAGCTTTAACTGTATTGTAGTGTGTTGAAATGTAAACTAGAGGTCATTAAAAAACGCAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196896 lncRNA downstream 57958 15605903 ~ 15607522 (-) True G166286
XR_004579032.1 lncRNA downstream 174472 15481130 ~ 15491008 (-) False LOC113539013
XR_003403894.2 lncRNA downstream 179505 15481131 ~ 15485975 (-) True LOC113539013
TU196520 lncRNA downstream 419571 15245584 ~ 15245909 (-) True G165951
TU196519 lncRNA downstream 420017 15244866 ~ 15245463 (-) True G165950
TU196943 lncRNA upstream 216457 15895667 ~ 15896570 (-) True G166319
TU197013 lncRNA upstream 253947 15933157 ~ 15933437 (-) True G166380
TU197027 lncRNA upstream 321009 16000219 ~ 16000512 (-) True G166390
TU197138 lncRNA upstream 588019 16267229 ~ 16267515 (-) True G166484
TU197311 lncRNA upstream 765631 16444841 ~ 16446005 (-) True G166633
XM_026933725.2 mRNA downstream 1985 15635440 ~ 15663495 (-) False ktn1
XM_026933721.2 mRNA downstream 1986 15633002 ~ 15663494 (-) False ktn1
XM_026933723.2 mRNA downstream 1986 15633002 ~ 15663494 (-) False ktn1
XM_026933722.2 mRNA downstream 1986 15633002 ~ 15663494 (-) False ktn1
XM_026933720.2 mRNA downstream 1986 15633002 ~ 15663494 (-) True ktn1
XM_026934206.2 mRNA upstream 1711 15680921 ~ 15702721 (-) True atg2b
XM_026934207.2 mRNA upstream 3865 15683075 ~ 15702721 (-) False atg2b
XM_026934210.2 mRNA upstream 27415 15706625 ~ 15710744 (-) True LOC113538816
XM_026933954.2 mRNA upstream 36350 15715560 ~ 15762718 (-) True eml5
XM_026933956.2 mRNA upstream 37615 15716825 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 1985 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 1985 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 343476 15304623 ~ 15322004 (-) False pgfb
XR_004578922.1 other downstream 548116 15109594 ~ 15117364 (-) False capn3a
TU196128 other downstream 931630 14727204 ~ 14733850 (-) False nkx2.2a
XR_003403876.2 other upstream 41247 15720457 ~ 15762718 (-) False eml5
XR_003403899.1 other upstream 337142 16016352 ~ 16016484 (-) True LOC113539022
XR_004578948.1 other upstream 1566729 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 1566729 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 2626533 18305743 ~ 18316207 (-) True G167566

Expression Profile