Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026934210.2 |
| length | 1171 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 5 |
| gene id | LOC113538816 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 15706625 ~ 15710744 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K13443 | NPC2; Niemann-Pick C2 protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU196896 | lncRNA | downstream | 99103 | 15605903 ~ 15607522 (-) | True | G166286 |
| XR_004579032.1 | lncRNA | downstream | 215617 | 15481130 ~ 15491008 (-) | False | LOC113539013 |
| XR_003403894.2 | lncRNA | downstream | 220650 | 15481131 ~ 15485975 (-) | True | LOC113539013 |
| TU196520 | lncRNA | downstream | 460716 | 15245584 ~ 15245909 (-) | True | G165951 |
| TU196519 | lncRNA | downstream | 461162 | 15244866 ~ 15245463 (-) | True | G165950 |
| TU196943 | lncRNA | upstream | 184923 | 15895667 ~ 15896570 (-) | True | G166319 |
| TU197013 | lncRNA | upstream | 222413 | 15933157 ~ 15933437 (-) | True | G166380 |
| TU197027 | lncRNA | upstream | 289475 | 16000219 ~ 16000512 (-) | True | G166390 |
| TU197138 | lncRNA | upstream | 556485 | 16267229 ~ 16267515 (-) | True | G166484 |
| TU197311 | lncRNA | upstream | 734097 | 16444841 ~ 16446005 (-) | True | G166633 |
| XM_026934206.2 | mRNA | downstream | 3904 | 15680921 ~ 15702721 (-) | True | atg2b |
| XM_026934207.2 | mRNA | downstream | 3904 | 15683075 ~ 15702721 (-) | False | atg2b |
| XM_026933732.2 | mRNA | downstream | 27415 | 15665480 ~ 15679210 (-) | False | msh4 |
| XM_026933730.2 | mRNA | downstream | 27415 | 15665480 ~ 15679210 (-) | True | msh4 |
| XM_026933725.2 | mRNA | downstream | 43130 | 15635440 ~ 15663495 (-) | False | ktn1 |
| XM_026933954.2 | mRNA | upstream | 4816 | 15715560 ~ 15762718 (-) | True | eml5 |
| XM_026933956.2 | mRNA | upstream | 6081 | 15716825 ~ 15762718 (-) | False | eml5 |
| XM_026933957.2 | mRNA | upstream | 6081 | 15716825 ~ 15762607 (-) | False | eml5 |
| XM_026934007.2 | mRNA | upstream | 53114 | 15763858 ~ 15799664 (-) | True | itpk1b |
| XM_026933764.2 | mRNA | upstream | 91495 | 15802239 ~ 15808833 (-) | True | plk4 |
| XR_003403862.2 | other | downstream | 43130 | 15635086 ~ 15663495 (-) | False | ktn1 |
| XR_003403861.2 | other | downstream | 43130 | 15635086 ~ 15663495 (-) | False | ktn1 |
| TU196803 | other | downstream | 384621 | 15304623 ~ 15322004 (-) | False | pgfb |
| XR_004578922.1 | other | downstream | 589261 | 15109594 ~ 15117364 (-) | False | capn3a |
| TU196128 | other | downstream | 972775 | 14727204 ~ 14733850 (-) | False | nkx2.2a |
| XR_003403876.2 | other | upstream | 9713 | 15720457 ~ 15762718 (-) | False | eml5 |
| XR_003403899.1 | other | upstream | 305608 | 16016352 ~ 16016484 (-) | True | LOC113539022 |
| XR_004578948.1 | other | upstream | 1535195 | 17245939 ~ 17247819 (-) | False | htr1b |
| XR_004578949.1 | other | upstream | 1535195 | 17245939 ~ 17247157 (-) | False | htr1b |
| TU198371 | other | upstream | 2594999 | 18305743 ~ 18316207 (-) | True | G167566 |
