RNA id: XM_026933764.2


Basic Information

Item Value
RNA id XM_026933764.2
length 3397
RNA type mRNA
GC content 0.50
exon number 16
gene id plk4
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15802239 ~ 15808833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCAGGCAGAAGCATGCGCGTGCGGGCGTGTCGGTCCTCCCGATGACGTCGCTCTACGTCATTACGCTTCTAACGGGCGGACTTTTCAAAATGGAGGAAAGGAAAATATTTTGGAGCGGAGCAAAACTACAacctttaaatgtatttttacactTGGCAAGCGACGAAGGCACACGTTTCATGCAATGAAAAAGGATTTTTATTATCGTACTTAAAGAATCTTTTCGAGTAAGGAGTCTAATGAAGTAAAAATGAGTGTCTCTATCGGCGATAAAATTGAGGACTTCAGAGTTCTCACCTTGCTCGGTAAGGGCTCCTTTGCCTGCGTCTACAGAGCCAAATCTGTCAACACTGGCTTGGAAGTGGCAATCAAAATGATTGATAAGAAGGCCATGCACAAAGCTGGCATGGTGCAACGTGTCATTAACGAGGTGGAGATCCAGTGTCGGTTAAAACACCCCTCAGTGCTGGAGCTGTACAATTACTTTGAAGACAGCAATTATGTGTATCTGGTCCTGGAGATGTGCCATAACGGAGAAATGAGCCGTTATCTGAAAGACAGGAAGAAGCCTTTCACAGAAGAAGaagTGAGACACTTCATGCACCAGATTGTGAAGGGCATGCTGTATCTGCACACTCATGGCATTATGCACAGAGACCTGACTCTGTCGAACCTGCTTCTCACCAGTAGCATGAACATTAAAATCGCCGACTTTGGCTTGGCCACACAGCTCAAGCTGCCTAGTGAGAAGCACTTCACCATGTGTGGCACTCCCAACTACATCTCTCCTGAGGTGGCCACTCGGAGTGCCCACGGCCTGGAGTCGGACGTCTGGTCTCTGGGCTGTATGTTCTATGCCTTTCTGACGGGCAGGCCCCCCTTCGACACAGACACTGTCAAACACACCCTCAGTAAAGTGGTTTTAGGGGAGTACCAGATGCCCACTCATGTGTCAGCTGAAGCTCAGGATCTTATTCAGCTGCTGCTGCAGAAGAATCCTGCCCTGAGGCCCAGCCTGTCAGCAGTGCTAGACCACCCTTTCATGACTCAGAGTGGATCCACGTCAAGTAAAGACTCTGGGGGCAGTGATGGAGGCTCCATGGACAGTGGCATAGCGACGATATCTACAGCGTCCAACACTaccagcaacagcagcagcagtcggCTCCACAGGAAAACCAGGCAGGTGATTGGGCAGGCCTTACCCAACCGCATGGTGCCACTGCCCAGCCATTCGCAGCAATCCAGCAGCTCCAGCCTTAAGGGAGAGCAGGACTGGCAGCCACATGCACCAGGCAGTGTGAGGGTTCCTGTGGAGCTTGTCAGTGGAAGGCCTCATTCTCGCTACCTGAGACGGGCTCACTCCTCTGATCGCTCTGGTGCTGGCTATAGCCATGCTAGGCAGGAGGTGGAGCTGGAGCGATGCCACTCGGAGGAGGTGCTTCCGGGATCTGGTCGCATTTTCCCATCAACCTCCAACTATCAGGACAACGGCAATGGCTATGCTGGACATGGACGTCTACCCTCTCCACCTGTCAAACAGCCTGCAAGCTCTGGGTCTTCCTTTTCTGCTCCGGTGCATCCTATTAGATTACAGACAGCAGAATCTAGCACACAGCCATGGTTCAGCACCGATGGTTCTTTCAAGAGACCAGCAGACGTCAGCAGTTACAGCAGCAGTGGTAGTTTCCATTCTGGGCGAGAGGCAGTTGGGGCTCTGCCTTCCTGCAGTGATCAACCAACAGTGAGAGCAACAAGTGGCCTTCCTCCTCAATTATACCACCAATCCTCCTCTCACAGTGACCCCGGTCCCTGTAGGGAGGATGGGTTCGGAATGAGCCACTTCCCAACACCTCAGGGCTGTGTGGATGTCCAAAATGCTCCCCTGTCCAGGAGCAAAGCTAATGAgggaaaggagaagaagagtCCTCTGTTTCCTCCTCTCTGTGCAGCCAGACTGAAGCCCATTCGACAGAAGACCAAAAATGCTGTGGTCAGTATCCTAGATACAGGAGAGGTGTGTATGGAGCTTCTAAAAGGCCAAGGAGCTCAGGAGAGGGTCAAGGAAGTACTGAGGATATCCTCTGATGGCTCCATGGTGACTGTGTACCAGCCCAATGAGGGGAAAGGCTTCCCTGTGCTGGATCATCCGCCCTCTCCCCCAGAAGACATTTTTATATGCAGCTATGAAGATTTACCAGAGAAGTACTGGAAGAAGTATCAATATGCCACCAAGTTTGTTCAGTTGGTGAAATCAAAGACTCCAAAAATAACCTTGTACACCAAGTTTGCCAAGTGCATGTTAATGGAAAATTCTCCCAATTCAGACCTGGAAATGTGCTTCTATGACGGTGCAAAAACCCATAAGACAAGCGAACAGGTGCGAGTGGTGGAGAAAAGTGGCAAGTCGTACACAGTGAAAGGGGATGTAGGTTTAAGCGGCATAAGCCCTGAGTGCAGACGTTACATGGAGCTCACAGATGAGGGGCACAGGATGTGTCTGTCTCTGGAGGCTGCCATCAGTGCTGAGGAGCAGCGTAGTGCTGGAGCCACTCCATTCTTCCCCATAACTATCGGCAGGAGGCCCACTAACTCTGCCTCCTCCTGCCCAGTGGCCCAGCCTGCCTCTGAACAGGCTCCTACAGCTCCTGGTGAAGTTGCTCAGGTGTGCCTGAGTCCGCCTCACCAACTCCACATCACCCCTTCTATGATTTCCTACAGTGGGTCTGATTTTACAACAGCCAGTTTGGCTAAAGTCAGCTCCCCGCGCTCGGCCAAAGATGGATGTAGCATCAGCGCAGGAAAAGTGCTGAAGTCCATCTTTGTACCCAACATCGGCTGGGCCTCTCAGcTAACAAGTGGAGAAGTCTGGGTTCAGTTTAATGATGGGTCCCAGCTGGTGGTCCAGGCAGGCGTCTCCTGCATCACATTCACCTCTCCTGAAGGACACATCACCCGGTATAAGGAGAATGAGAAGTTACCTGAGCTGGTTAAGGAGAAGCTGCATTGCCTTTCATCCATTCTCAGCCTTTTGGCGAGTCCTGCTGCACGACGCTGAGCAGCGACACTTACGCAGAAAAGACGGAGCCCATGCTATGATCACCATGCAAAGCAGTCAAAagcacttcctttttttttctttttttacttcatcCATTGTAAATTCTCTTCCtcaaaatgcattaaatgtctgtaaatacattttaaacagttgTACAGATTGTTCCAAAactatgaaaaatatatatttttatgttgtatAGTGTGTTTCTTGAACTTCTTGTCTTTTgcctttataatttttttacctTGCAACAGTGTATCCCCTGGGCTTCAGTGAAAAGTCAGATGTACAAACATATCAACAATAAACATCTGTCTGCTGGCTAATGTGA

Function

GO:

id name namespace
GO:0098535 de novo centriole assembly involved in multi-ciliated epithelial cell differentiation biological_process
GO:0046601 positive regulation of centriole replication biological_process
GO:0006468 protein phosphorylation biological_process
GO:0098536 deuterosome cellular_component
GO:0005814 centriole cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08863 PLK4; polo-like kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196896 lncRNA downstream 194717 15605903 ~ 15607522 (-) True G166286
XR_004579032.1 lncRNA downstream 311231 15481130 ~ 15491008 (-) False LOC113539013
XR_003403894.2 lncRNA downstream 316264 15481131 ~ 15485975 (-) True LOC113539013
TU196520 lncRNA downstream 556330 15245584 ~ 15245909 (-) True G165951
TU196519 lncRNA downstream 556776 15244866 ~ 15245463 (-) True G165950
TU196943 lncRNA upstream 86834 15895667 ~ 15896570 (-) True G166319
TU197013 lncRNA upstream 124324 15933157 ~ 15933437 (-) True G166380
TU197027 lncRNA upstream 191386 16000219 ~ 16000512 (-) True G166390
TU197138 lncRNA upstream 458396 16267229 ~ 16267515 (-) True G166484
TU197311 lncRNA upstream 636008 16444841 ~ 16446005 (-) True G166633
XM_026934007.2 mRNA downstream 2575 15763858 ~ 15799664 (-) True itpk1b
XM_026933954.2 mRNA downstream 39521 15715560 ~ 15762718 (-) True eml5
XM_026933956.2 mRNA downstream 39521 15716825 ~ 15762718 (-) False eml5
XM_026933957.2 mRNA downstream 39632 15716825 ~ 15762607 (-) False eml5
XM_026934210.2 mRNA downstream 91495 15706625 ~ 15710744 (-) True LOC113538816
XM_034307764.1 mRNA upstream 2509 15811342 ~ 15823965 (-) False hspa4l
XM_026933674.2 mRNA upstream 2509 15811342 ~ 15821565 (-) True hspa4l
XM_026934036.2 mRNA upstream 34637 15843470 ~ 15847375 (-) True mrpl35
XM_026934197.2 mRNA upstream 39204 15848037 ~ 15855183 (-) True si:dkey-21a6.5
XM_026933793.2 mRNA upstream 49897 15858730 ~ 15863628 (-) False nt5c1ab
XR_003403876.2 other downstream 39521 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 138744 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 138744 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 480235 15304623 ~ 15322004 (-) False pgfb
XR_004578922.1 other downstream 684875 15109594 ~ 15117364 (-) False capn3a
XR_003403899.1 other upstream 207519 16016352 ~ 16016484 (-) True LOC113539022
XR_004578948.1 other upstream 1437106 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 1437106 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 2496910 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 2496910 18305743 ~ 18316207 (-) False G167566

Expression Profile