LOC113547729


Basic Information

Item Value
gene id LOC113547729
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 1658708 ~ 1733623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307995.1
aacaacaacagaagaaaCAGCACCAGaagaaacaacagcagAAGACTGTTCAGACAGAGCTGATTCTGAAGTACCATCAGATGAAGTTTTGTGTGGCGAAGATCTGACTCAGTCGAAAGGGGAATTTTTCAGCCCCAATTATCCCAATAGTTATCCAGATGCAGAGTGCACATGGAGGCTCCTTGGTTCTGAGCAGCAGTTGGTTATGCTAAACTTCACATTTGTTGACCTGGAGTGGTGGATGGACCTGATCCATGTGTACGATGGTCCAAGTGACGAGTCTCCACTTTTGGACATTTTGACTGGAAATCGTAGAAATTCTTTCAATTCCAGTGGCAGATACATGACAGTCACTTTCTCCAGCTATGACAGCATGGTTTACAAAGGGTTTCGGGCAGAATGGAATTTCCTGGATTCCCCATCCTGCAGGTGTAACTGTGGCTacaatctcagtgtgtgttcctgcaccAGCGACTGTCGGGACAACAGACACTGCTGTTATGATTATGATGATTATTGTTCCagtacaacaacaacaccagTCTACTGTTTCACTACAACTGGTCCTGAGACAACAACACCAACAGAGTCTGGCACAACagaagaaacaacaacaacaacaacaacagaagaaaCAACACCAGAAAAAACAACACCAGATGAtgataaaaaacaaaacgacAAAAAGGACAACAATGAGCGTGGCCTTCAAAAAGTTTCCAGTTCTACTTTTCCCTCCATTCTACCCATGGTCCCCTTTCTATTACTTCTTCCCTTTGTCccctttttccccattttctccttGTTCTCCACTCTCTCCATTCTACCCAgtttcttctttcctctctttaaCCCCTTTCCCAATCTCACCCCAATGCTTCCCATGCCAATTAACCCCCCTCCACCCATGATTCCGTGGCCAACGGACAGGATAAAAGTCACACAAAAACCAGATACTGAACCAACACAACCTCCACAAAcgacagcaggcaCAACAACAGAAGGATcctgggaaacaacagcagacactgcactgacacaaactccacaaacagaagcaggcaCAACAACAGAAGGAGcctgggaaacaacagcagATACTGCACTGACACAAACTCAACAAACAGATACTGCACTGACACATACTCCACAAACAGAAGCAGATACTGAACCAACACAGTCTCCACACACAGAAGcagTTACTGAACCAACAAAACCTCCACAAACAGCAGCAGTTTCAAGCACGACAACAGAAGCATCCAGGGACACAGCAccagTTACTGAACCAACAAAACCTCCACAAACAGCAGCAGTTTCAAGCACGACAACAAAAGCATCCAGCGACACAGCAccagTTACTGAACCAACAAAACCTCCACAAACAGCAGCAGTTTCAAGCACGACAACAGAAGCATCCAGGGACACAGCAccagTTACTGAACCAACAAAACCTCCACAAACAGCAGCAGTTTCAAGCACGACAACAGAAGCATCCAGGGACACAGCAccagTTACTGAACCAACAAAACCTCCACAAACAGTAGCAGGCCGGGTGGACTGTCTTTCTGGTCGGATGAACATTACCATCAGTAAATTGTATATGGACTCACTGGGCTACAGCTGGAATGATCTTTACTTAGGTGACCTTAACTGCAAAGCTTCAACCAACAACTATTATATCACCTTCAACTTCCCGCTCAGGAGCTGCAACACCAGGAGGAAGATCCGCAACGGACACATTATTTACACCAATAATGTAAAAGCAATCAAGTCCTCATTGTACGCAATCAGTGCTGACTTCCTTCTGGAGGTGAGCTGCGTGATCAGGCCCAACGCCATTGTTGAGACGTTCTATGAAGCCTGGGAGATCACAAACGCTACCATCATTGGAGGTGGTCAGTTTAACCCCATCATCACCTTTTACCACTCCAGCGACTTCTCCTACCCCATCACTGATTTGTCCTACCGAGTGGGCTTTGGTCAGGAACTGTTTGTGCAGGTGCGGCTGAGAGAAGCTGATCCCAGCCTCGACCTGTTCATTGACTCCTGTGTGGCCTCACCCAACCAAGACTTCACCGCCCACACCCACGACCTCATTCGCAATggGTGTCcgagaaacaacacacacatctacacgaACGGAGAGAATTATTATGCTCGGTTCCGGTTCCATGCACCCATCTTCCTGCCTGCACGTAGCCCTGTCTTCCTCAAATGTGAAGTCTTGATCTGCGCTGACGACGACTACAACTCACGATGTCGCCAAGGATGCCGTCATCACAGGAAGAGAAGCTTGAGCTCCACCCACTATGCTGAGGTCGTGACACTTGGACCAATCATACTCAAAGGTCCATAGGAGGCTGCAGCCAAGaatgaagagaagaaagaggagtGAACTTACAGCAACTAATCATTTAAACCATTTAATCCAATTAACACAGTATCATTTTACTAACCTTCTAATAAAGCATTCTTTAAAGGCA

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307995.1 True 2483 mRNA 0.46 30 1658708 1733623

Neighbor

gene id symbol gene type direction distance location
hmx2 LOC108269523 coding downstream 65549 1588010 ~ 1593159 (-)
LOC113547723 NA coding downstream 218825 1435359 ~ 1439883 (-)
LOC113547731 LOC108269684 coding downstream 268232 1384688 ~ 1390476 (-)
ptena LOC108269686,LOC108411875,LOC104929647,LOC103476793,LOC103360879,LOC106513467 coding downstream 278714 1363779 ~ 1379994 (-)
fas NA coding downstream 304811 1344010 ~ 1353897 (-)
LOC117598315 NA coding upstream 2563 1736186 ~ 1744340 (-)
LOC117598256 NA coding upstream 25328 1758951 ~ 1801032 (-)
LOC113547742 LOC108261668 coding upstream 219571 1953194 ~ 1965215 (-)
LOC113547740 LOC108261668 coding upstream 238692 1972315 ~ 1989427 (-)
iars2 iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 coding upstream 664393 2398016 ~ 2412915 (-)
G157537 NA non-coding downstream 100916 1550644 ~ 1557792 (-)
G157470 NA non-coding downstream 287476 1254608 ~ 1371232 (-)
G157458 NA non-coding downstream 345490 1240857 ~ 1313218 (-)
LOC117598316 NA non-coding upstream 29221 1762844 ~ 1765151 (-)
LOC117598317 NA non-coding upstream 79053 1812676 ~ 1814986 (-)
LOC117598318 NA non-coding upstream 83861 1817484 ~ 1858533 (-)
G157652 NA non-coding upstream 310809 2044432 ~ 2045036 (-)
G157657 NA non-coding upstream 322397 2056020 ~ 2058267 (-)
LOC113547736 hmx1,LOC108269487 other downstream 52133 1603860 ~ 1606575 (-)
G157519 LOC108269687 other downstream 251146 1403526 ~ 1407562 (-)
G157110 slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 other downstream 1113949 514801 ~ 544759 (-)
G156942 LOC107676803 other downstream 1305538 352834 ~ 353170 (-)
LOC113547724 LOC108269731 other upstream 124932 1858555 ~ 1911304 (-)
G157723 NA other upstream 557399 2291022 ~ 2291459 (-)
G158503 NA other upstream 1634481 3368104 ~ 3369756 (-)
G158507 NA other upstream 1657117 3390740 ~ 3394808 (-)
G158509 NA other upstream 1661868 3395491 ~ 3398763 (-)

Expression


Co-expression Network