Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598315 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 1736186 ~ 1744340 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034308241.1 | True | 803 | mRNA | 0.44 | 6 | 1736186 | 1744340 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113547729 | NA | coding | downstream | 2563 | 1658708 ~ 1733623 (-) |
| hmx2 | LOC108269523 | coding | downstream | 143027 | 1588010 ~ 1593159 (-) |
| LOC113547723 | NA | coding | downstream | 296303 | 1435359 ~ 1439883 (-) |
| LOC113547731 | LOC108269684 | coding | downstream | 345710 | 1384688 ~ 1390476 (-) |
| ptena | LOC108269686,LOC108411875,LOC104929647,LOC103476793,LOC103360879,LOC106513467 | coding | downstream | 356192 | 1363779 ~ 1379994 (-) |
| LOC117598256 | NA | coding | upstream | 14611 | 1758951 ~ 1801032 (-) |
| LOC113547742 | LOC108261668 | coding | upstream | 208854 | 1953194 ~ 1965215 (-) |
| LOC113547740 | LOC108261668 | coding | upstream | 227975 | 1972315 ~ 1989427 (-) |
| iars2 | iars2,LOC107654863,LOC107583609,LOC107659255,LOC107582886 | coding | upstream | 653676 | 2398016 ~ 2412915 (-) |
| qrsl1 | qrsl1 | coding | upstream | 705052 | 2449392 ~ 2460527 (-) |
| G157537 | NA | non-coding | downstream | 178394 | 1550644 ~ 1557792 (-) |
| G157470 | NA | non-coding | downstream | 364954 | 1254608 ~ 1371232 (-) |
| G157458 | NA | non-coding | downstream | 422968 | 1240857 ~ 1313218 (-) |
| LOC117598316 | NA | non-coding | upstream | 18504 | 1762844 ~ 1765151 (-) |
| LOC117598317 | NA | non-coding | upstream | 68336 | 1812676 ~ 1814986 (-) |
| LOC117598318 | NA | non-coding | upstream | 73144 | 1817484 ~ 1858533 (-) |
| G157652 | NA | non-coding | upstream | 300092 | 2044432 ~ 2045036 (-) |
| G157657 | NA | non-coding | upstream | 311680 | 2056020 ~ 2058267 (-) |
| LOC113547736 | hmx1,LOC108269487 | other | downstream | 129611 | 1603860 ~ 1606575 (-) |
| G157519 | LOC108269687 | other | downstream | 328624 | 1403526 ~ 1407562 (-) |
| G157110 | slc8a1b,slc8a1,LOC108269601,LOC108430220,LOC107583646 | other | downstream | 1191427 | 514801 ~ 544759 (-) |
| G156942 | LOC107676803 | other | downstream | 1383016 | 352834 ~ 353170 (-) |
| LOC113547724 | LOC108269731 | other | upstream | 114215 | 1858555 ~ 1911304 (-) |
| G157723 | NA | other | upstream | 546682 | 2291022 ~ 2291459 (-) |
| G158503 | NA | other | upstream | 1623764 | 3368104 ~ 3369756 (-) |
| G158507 | NA | other | upstream | 1646400 | 3390740 ~ 3394808 (-) |
| G158509 | NA | other | upstream | 1651151 | 3395491 ~ 3398763 (-) |
